Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27665 | 5' | -64.5 | NC_005882.1 | + | 15668 | 0.66 | 0.215244 |
Target: 5'- aCGCC-CUuGAUgACCUGuacGGCGCGCAg -3' miRNA: 3'- -GCGGaGGcCUGgUGGGCu--CCGCGCGU- -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 21754 | 0.66 | 0.209808 |
Target: 5'- gCGUCgCCGGGCCGCUCGGGuCGC-CGa -3' miRNA: 3'- -GCGGaGGCCUGGUGGGCUCcGCGcGU- -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 10706 | 0.66 | 0.199291 |
Target: 5'- cCGCUcgaUCCGGuAUCACaaCCGccGGCGCGCGu -3' miRNA: 3'- -GCGG---AGGCC-UGGUG--GGCu-CCGCGCGU- -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 2757 | 0.66 | 0.204491 |
Target: 5'- aGCgUCCGGACCACaagcccgaaaaCCGAcucgcugaaGGCG-GCAa -3' miRNA: 3'- gCGgAGGCCUGGUG-----------GGCU---------CCGCgCGU- -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 2135 | 0.67 | 0.17001 |
Target: 5'- aCGCCUgCGugacGAUCGCCuggauuuCGGGGCGUGCGu -3' miRNA: 3'- -GCGGAgGC----CUGGUGG-------GCUCCGCGCGU- -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 11934 | 0.67 | 0.174989 |
Target: 5'- cCGCCgcgcCCGuGGCCGCgcaagugcccgCCGAGGCGCugGCu -3' miRNA: 3'- -GCGGa---GGC-CUGGUG-----------GGCUCCGCG--CGu -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 7481 | 0.67 | 0.189235 |
Target: 5'- gCGCCaggacucggCgGGcACCGCCUgGAGaGCGCGCAa -3' miRNA: 3'- -GCGGa--------GgCC-UGGUGGG-CUC-CGCGCGU- -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 32103 | 0.67 | 0.193704 |
Target: 5'- aGCCUaCCGaACCgaucgugccgccgGCCUGGGGCGCGa- -3' miRNA: 3'- gCGGA-GGCcUGG-------------UGGGCUCCGCGCgu -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 22929 | 0.67 | 0.194206 |
Target: 5'- uGCCUUCGGcguacgucguGCCGCCCGAGuCGUucuucaGCAc -3' miRNA: 3'- gCGGAGGCC----------UGGUGGGCUCcGCG------CGU- -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 12600 | 0.67 | 0.184377 |
Target: 5'- uCGCCgcagcgCCGGccGCCGCCgCGAcacacuGGCcGCGCGa -3' miRNA: 3'- -GCGGa-----GGCC--UGGUGG-GCU------CCG-CGCGU- -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 32618 | 0.68 | 0.16603 |
Target: 5'- aGCCUaggcgCCGaaucacuucucuGACCGCCCaGGGCGUGCc -3' miRNA: 3'- gCGGA-----GGC------------CUGGUGGGcUCCGCGCGu -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 22486 | 0.68 | 0.161706 |
Target: 5'- gGuCUUCCGG--CACgCUGGGGCGCGCGg -3' miRNA: 3'- gC-GGAGGCCugGUG-GGCUCCGCGCGU- -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 35421 | 0.68 | 0.157485 |
Target: 5'- gCGCCUCCGGGaCGCuuGAGaaauaCGCGUg -3' miRNA: 3'- -GCGGAGGCCUgGUGggCUCc----GCGCGu -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 20689 | 0.68 | 0.153363 |
Target: 5'- cCGCUUCaCGGA-CAUCUGGGGCGC-CAa -3' miRNA: 3'- -GCGGAG-GCCUgGUGGGCUCCGCGcGU- -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 31192 | 0.69 | 0.127154 |
Target: 5'- gGCCgagaUCGuGGCCgACUaCGAGGCGCGCAc -3' miRNA: 3'- gCGGa---GGC-CUGG-UGG-GCUCCGCGCGU- -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 5195 | 0.69 | 0.127154 |
Target: 5'- uCGCCagUCaGGACCACCUG-GGCG-GCAu -3' miRNA: 3'- -GCGG--AGgCCUGGUGGGCuCCGCgCGU- -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 23202 | 0.69 | 0.127154 |
Target: 5'- uCGCCUCCagcucGACCGagaCCGAGuucuGCGUGCAg -3' miRNA: 3'- -GCGGAGGc----CUGGUg--GGCUC----CGCGCGU- -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 18716 | 0.75 | 0.045617 |
Target: 5'- gCGCCUCgGGugguCCgGAGGCGCGCAg -3' miRNA: 3'- -GCGGAGgCCugguGGgCUCCGCGCGU- -5' |
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27665 | 5' | -64.5 | NC_005882.1 | + | 18657 | 1.08 | 0.000105 |
Target: 5'- gCGCCUCCGGACCACCCGAGGCGCGCAa -3' miRNA: 3'- -GCGGAGGCCUGGUGGGCUCCGCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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