miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27666 3' -54.6 NC_005882.1 + 17547 0.66 0.634837
Target:  5'- aGGAGCAcgUCGaccaGGauacCGGCGAAGUCAa- -3'
miRNA:   3'- -UCUUGU--AGCg---CCa---GCCGCUUCGGUag -5'
27666 3' -54.6 NC_005882.1 + 32469 0.66 0.623415
Target:  5'- aGGAACGgcagUGCGGaugCGuCGAcGCCAUCg -3'
miRNA:   3'- -UCUUGUa---GCGCCa--GCcGCUuCGGUAG- -5'
27666 3' -54.6 NC_005882.1 + 9964 0.66 0.612001
Target:  5'- gAGAACAucauuucccgUCGC-GUCGGCGAucuGCCc-- -3'
miRNA:   3'- -UCUUGU----------AGCGcCAGCCGCUu--CGGuag -5'
27666 3' -54.6 NC_005882.1 + 21221 0.66 0.612001
Target:  5'- cGAGuCGgaCGCGGcCGGCcAAGCCAUUc -3'
miRNA:   3'- uCUU-GUa-GCGCCaGCCGcUUCGGUAG- -5'
27666 3' -54.6 NC_005882.1 + 2090 0.66 0.600607
Target:  5'- cGAGCA-CGCGGcCGGUGuugaucuGGCCuUCc -3'
miRNA:   3'- uCUUGUaGCGCCaGCCGCu------UCGGuAG- -5'
27666 3' -54.6 NC_005882.1 + 3867 0.67 0.589241
Target:  5'- uGAGCGUCGCGaUCGGC--AGCgCGUg -3'
miRNA:   3'- uCUUGUAGCGCcAGCCGcuUCG-GUAg -5'
27666 3' -54.6 NC_005882.1 + 9744 0.67 0.589241
Target:  5'- gGGAGCGUUGCuGGUCG-CGAcaUCGUCa -3'
miRNA:   3'- -UCUUGUAGCG-CCAGCcGCUucGGUAG- -5'
27666 3' -54.6 NC_005882.1 + 23610 0.67 0.577914
Target:  5'- gAGAACGUgCGCcGUacgGGCGAcGUCAUCa -3'
miRNA:   3'- -UCUUGUA-GCGcCAg--CCGCUuCGGUAG- -5'
27666 3' -54.6 NC_005882.1 + 12531 0.67 0.577914
Target:  5'- cAGugUGUCGCGG-CGGCGGccggcgcugcGGCgAUCg -3'
miRNA:   3'- -UCuuGUAGCGCCaGCCGCU----------UCGgUAG- -5'
27666 3' -54.6 NC_005882.1 + 619 0.67 0.566635
Target:  5'- cGAGCugguUCGCcuGGUCGGCGccgaugucGGCCAgcUCg -3'
miRNA:   3'- uCUUGu---AGCG--CCAGCCGCu-------UCGGU--AG- -5'
27666 3' -54.6 NC_005882.1 + 23136 0.67 0.566635
Target:  5'- cAGAACucgGUCuCGGUCgagcuggaGGCGAuGGCCGUCc -3'
miRNA:   3'- -UCUUG---UAGcGCCAG--------CCGCU-UCGGUAG- -5'
27666 3' -54.6 NC_005882.1 + 27210 0.67 0.56551
Target:  5'- cGGGAUugccaucaccgcgAUCGCGGUCGGCGcguaccUCAUCu -3'
miRNA:   3'- -UCUUG-------------UAGCGCCAGCCGCuuc---GGUAG- -5'
27666 3' -54.6 NC_005882.1 + 11638 0.67 0.533176
Target:  5'- aGGAugAUCGCGG-CGaCGAgccAGCuCGUCa -3'
miRNA:   3'- -UCUugUAGCGCCaGCcGCU---UCG-GUAG- -5'
27666 3' -54.6 NC_005882.1 + 15634 0.67 0.533176
Target:  5'- cGAGCA-CGuCGGcauccuUCGG-GAGGCCGUCg -3'
miRNA:   3'- uCUUGUaGC-GCC------AGCCgCUUCGGUAG- -5'
27666 3' -54.6 NC_005882.1 + 7363 0.68 0.522175
Target:  5'- cGGAACAUCG-GcGUCGGUcacGGUCGUCg -3'
miRNA:   3'- -UCUUGUAGCgC-CAGCCGcu-UCGGUAG- -5'
27666 3' -54.6 NC_005882.1 + 26784 0.68 0.511264
Target:  5'- -cGACGcUCGCGGcCGGCuGggGCCu-- -3'
miRNA:   3'- ucUUGU-AGCGCCaGCCG-CuuCGGuag -5'
27666 3' -54.6 NC_005882.1 + 13726 0.68 0.489735
Target:  5'- cGGGCAUcgCGCGGcCGGCcaaguacuGGAGCCAg- -3'
miRNA:   3'- uCUUGUA--GCGCCaGCCG--------CUUCGGUag -5'
27666 3' -54.6 NC_005882.1 + 15046 0.69 0.448019
Target:  5'- aAGAACA--GCGG-CGGCGcauGGCUGUCg -3'
miRNA:   3'- -UCUUGUagCGCCaGCCGCu--UCGGUAG- -5'
27666 3' -54.6 NC_005882.1 + 388 0.69 0.448019
Target:  5'- cGAACAggUCGC-GUUGGCGAgcGGCgAUCu -3'
miRNA:   3'- uCUUGU--AGCGcCAGCCGCU--UCGgUAG- -5'
27666 3' -54.6 NC_005882.1 + 10289 0.69 0.427911
Target:  5'- gGGAaaACGUaCGCGGUCGGC--AGCauCAUCg -3'
miRNA:   3'- -UCU--UGUA-GCGCCAGCCGcuUCG--GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.