miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27666 5' -57.1 NC_005882.1 + 13834 0.66 0.506166
Target:  5'- gAGGGCaaCUUCACGGGCuaucaggagCUGGaGCa -3'
miRNA:   3'- -UCCUGgcGAAGUGCCUGua-------GACCcCG- -5'
27666 5' -57.1 NC_005882.1 + 15701 0.66 0.485197
Target:  5'- -uGGCCGgUcgCGCGGACGUCcGGGauGCg -3'
miRNA:   3'- ucCUGGCgAa-GUGCCUGUAGaCCC--CG- -5'
27666 5' -57.1 NC_005882.1 + 5923 0.66 0.485197
Target:  5'- cAGG-CCGUUcgCACGGGCAUC-GGcuaccGGCu -3'
miRNA:   3'- -UCCuGGCGAa-GUGCCUGUAGaCC-----CCG- -5'
27666 5' -57.1 NC_005882.1 + 7815 0.66 0.474868
Target:  5'- cGGGCCGCaccgUCcaucCGuGAag-CUGGGGCg -3'
miRNA:   3'- uCCUGGCGa---AGu---GC-CUguaGACCCCG- -5'
27666 5' -57.1 NC_005882.1 + 641 0.66 0.474868
Target:  5'- -cGACCGCauggC-CGGcCA-CUGGGGCg -3'
miRNA:   3'- ucCUGGCGaa--GuGCCuGUaGACCCCG- -5'
27666 5' -57.1 NC_005882.1 + 15394 0.66 0.474868
Target:  5'- cGGcuccCgCGCUUCACGGGCGgcgcCUucgacgcgcGGGGCa -3'
miRNA:   3'- uCCu---G-GCGAAGUGCCUGUa---GA---------CCCCG- -5'
27666 5' -57.1 NC_005882.1 + 26594 0.67 0.434709
Target:  5'- uGGGGCCGCUUUcagacgcagauuGCGGACcUC-GGGa- -3'
miRNA:   3'- -UCCUGGCGAAG------------UGCCUGuAGaCCCcg -5'
27666 5' -57.1 NC_005882.1 + 20850 0.67 0.41538
Target:  5'- uGGugCGCagCACGGACAUUUuccGGCc -3'
miRNA:   3'- uCCugGCGaaGUGCCUGUAGAcc-CCG- -5'
27666 5' -57.1 NC_005882.1 + 26777 0.69 0.327114
Target:  5'- aAGG-UCGCgacgcUCGCGGcCggCUGGGGCc -3'
miRNA:   3'- -UCCuGGCGa----AGUGCCuGuaGACCCCG- -5'
27666 5' -57.1 NC_005882.1 + 11990 0.69 0.327114
Target:  5'- -uGACgCGCaacgCACGuGcCGUCUGGGGCa -3'
miRNA:   3'- ucCUG-GCGaa--GUGC-CuGUAGACCCCG- -5'
27666 5' -57.1 NC_005882.1 + 20684 1.12 0.000239
Target:  5'- aAGGACCGCUUCACGGACAUCUGGGGCg -3'
miRNA:   3'- -UCCUGGCGAAGUGCCUGUAGACCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.