miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27667 3' -60.3 NC_005882.1 + 13724 0.66 0.339636
Target:  5'- --gCCGg-GCAucGCGCGGCcGGCCAAg- -3'
miRNA:   3'- caaGGCgaCGU--CGCGCCG-CCGGUUgu -5'
27667 3' -60.3 NC_005882.1 + 4633 0.66 0.339636
Target:  5'- -aUCUGUcGCAG-GCGGCGGUCGc-- -3'
miRNA:   3'- caAGGCGaCGUCgCGCCGCCGGUugu -5'
27667 3' -60.3 NC_005882.1 + 28375 0.66 0.337984
Target:  5'- --cCUGCUGaaucgugccucGCGCGGUGGCCAcCGc -3'
miRNA:   3'- caaGGCGACgu---------CGCGCCGCCGGUuGU- -5'
27667 3' -60.3 NC_005882.1 + 14180 0.66 0.337984
Target:  5'- aUUCCGCcuggaggugcagGCAcGCGCGgaaGCGGCCGccGCGg -3'
miRNA:   3'- cAAGGCGa-----------CGU-CGCGC---CGCCGGU--UGU- -5'
27667 3' -60.3 NC_005882.1 + 28325 0.66 0.331432
Target:  5'- --aCCGCcu--GCGCGGCcGCCGGCGg -3'
miRNA:   3'- caaGGCGacguCGCGCCGcCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 26206 0.66 0.331432
Target:  5'- --gCCaCUGcCGGCGCcuucGCGGCCGACu -3'
miRNA:   3'- caaGGcGAC-GUCGCGc---CGCCGGUUGu -5'
27667 3' -60.3 NC_005882.1 + 10891 0.66 0.323375
Target:  5'- -gUUCGUcGCAGCGCGcGCGGgCGcauGCGg -3'
miRNA:   3'- caAGGCGaCGUCGCGC-CGCCgGU---UGU- -5'
27667 3' -60.3 NC_005882.1 + 3972 0.66 0.322578
Target:  5'- cUUCCggGCUGCucuugaccucuccAGCGgggccaCGGCGGCCAugAu -3'
miRNA:   3'- cAAGG--CGACG-------------UCGC------GCCGCCGGUugU- -5'
27667 3' -60.3 NC_005882.1 + 10674 0.66 0.307702
Target:  5'- -gUCgGCaGCGGCGgaGGCGGCggCAGCGu -3'
miRNA:   3'- caAGgCGaCGUCGCg-CCGCCG--GUUGU- -5'
27667 3' -60.3 NC_005882.1 + 30521 0.66 0.307702
Target:  5'- -aUCaUGCUGC-GCGCGGCcgacaaggugacGGUCGACGu -3'
miRNA:   3'- caAG-GCGACGuCGCGCCG------------CCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 15204 0.66 0.307702
Target:  5'- --cCCGCUGCucacGGCGCuccCGGUCGACGc -3'
miRNA:   3'- caaGGCGACG----UCGCGcc-GCCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 17177 0.66 0.300085
Target:  5'- -aUCCGCUuuaaaaGCGGCGCGaccagcgccuGCGcGUCGGCAu -3'
miRNA:   3'- caAGGCGA------CGUCGCGC----------CGC-CGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 5789 0.66 0.292616
Target:  5'- ---aCGCuaUGCAggaGCGCGGCggGGCCGACc -3'
miRNA:   3'- caagGCG--ACGU---CGCGCCG--CCGGUUGu -5'
27667 3' -60.3 NC_005882.1 + 27674 0.66 0.292616
Target:  5'- -aUgCGCUGCAGggacgcCGCGGCcgcGGCCuGCGu -3'
miRNA:   3'- caAgGCGACGUC------GCGCCG---CCGGuUGU- -5'
27667 3' -60.3 NC_005882.1 + 11992 0.66 0.292616
Target:  5'- cUUgCGCgGCcacgGGCGCGGCGGCgCcgAGCAa -3'
miRNA:   3'- cAAgGCGaCG----UCGCGCCGCCG-G--UUGU- -5'
27667 3' -60.3 NC_005882.1 + 28365 0.67 0.285292
Target:  5'- -gUCCGCgaUGC-GCGUGGCcGUCGACGc -3'
miRNA:   3'- caAGGCG--ACGuCGCGCCGcCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 19039 0.67 0.285292
Target:  5'- ---gCGUUGUcGCGCGGaUGGCCGAUg -3'
miRNA:   3'- caagGCGACGuCGCGCC-GCCGGUUGu -5'
27667 3' -60.3 NC_005882.1 + 27109 0.67 0.27108
Target:  5'- ---aUGCUGCuggcccGCGUccugGGCGGCCAGCu -3'
miRNA:   3'- caagGCGACGu-----CGCG----CCGCCGGUUGu -5'
27667 3' -60.3 NC_005882.1 + 12554 0.67 0.250837
Target:  5'- ----nGCUGCGGCGaucggcgcacUGGCGGCUGGCGc -3'
miRNA:   3'- caaggCGACGUCGC----------GCCGCCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 33045 0.67 0.250837
Target:  5'- --cCUGCgccuucagGUAGCGCGuGCGGCCGcCGa -3'
miRNA:   3'- caaGGCGa-------CGUCGCGC-CGCCGGUuGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.