miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27667 3' -60.3 NC_005882.1 + 20731 1.08 0.000176
Target:  5'- cGUUCCGCUGCAGCGCGGCGGCCAACAg -3'
miRNA:   3'- -CAAGGCGACGUCGCGCCGCCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 6464 0.76 0.054956
Target:  5'- --gUCGCccagGCAGCGCGcGCGGCCGGCc -3'
miRNA:   3'- caaGGCGa---CGUCGCGC-CGCCGGUUGu -5'
27667 3' -60.3 NC_005882.1 + 21279 0.76 0.058276
Target:  5'- ---gCGCucgaUGCGGCGaCGGCGGCCGGCGa -3'
miRNA:   3'- caagGCG----ACGUCGC-GCCGCCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 26704 0.75 0.075775
Target:  5'- -gUCCGUgagcgacgGCAGCaGCGcGCGGCCAACc -3'
miRNA:   3'- caAGGCGa-------CGUCG-CGC-CGCCGGUUGu -5'
27667 3' -60.3 NC_005882.1 + 9487 0.74 0.078006
Target:  5'- --gCCGCUGCGauuggcGCGCuGGCGGCCGcaaGCAc -3'
miRNA:   3'- caaGGCGACGU------CGCG-CCGCCGGU---UGU- -5'
27667 3' -60.3 NC_005882.1 + 12519 0.74 0.080299
Target:  5'- cUUUCGC-GCGGCcagugugucgcgGCGGCGGCCGGCGc -3'
miRNA:   3'- cAAGGCGaCGUCG------------CGCCGCCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 22951 0.73 0.10705
Target:  5'- -aUUCGCcgGguGCGaCGGCGGCCAagGCGa -3'
miRNA:   3'- caAGGCGa-CguCGC-GCCGCCGGU--UGU- -5'
27667 3' -60.3 NC_005882.1 + 28052 0.71 0.13054
Target:  5'- ----aGCUGC-GCGCGGCGGUgAGCGc -3'
miRNA:   3'- caaggCGACGuCGCGCCGCCGgUUGU- -5'
27667 3' -60.3 NC_005882.1 + 26935 0.71 0.142
Target:  5'- uUUCgGCaUGgGGCGgGcGCGGCCGGCAa -3'
miRNA:   3'- cAAGgCG-ACgUCGCgC-CGCCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 22078 0.71 0.14602
Target:  5'- cUUCCGCccgccggacUGCAaaaagcuCGCGGCGGUCAGCGa -3'
miRNA:   3'- cAAGGCG---------ACGUc------GCGCCGCCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 27083 0.71 0.150143
Target:  5'- ----gGgaGCAGCGC-GCGGCCAACGa -3'
miRNA:   3'- caaggCgaCGUCGCGcCGCCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 4911 0.7 0.154373
Target:  5'- uGUUCCGUgccGCGGCGCGGCaGGU--ACGu -3'
miRNA:   3'- -CAAGGCGa--CGUCGCGCCG-CCGguUGU- -5'
27667 3' -60.3 NC_005882.1 + 27574 0.7 0.15871
Target:  5'- --gUCGCcGCGcGCGCGGCcGCCGGCAu -3'
miRNA:   3'- caaGGCGaCGU-CGCGCCGcCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 3332 0.7 0.163157
Target:  5'- -aUCuCGCcGC-GCGaCGGCGGCCGGCc -3'
miRNA:   3'- caAG-GCGaCGuCGC-GCCGCCGGUUGu -5'
27667 3' -60.3 NC_005882.1 + 3276 0.7 0.163157
Target:  5'- --gCCGCcGUcGCGCGGCgagaucucuucGGCCAGCAc -3'
miRNA:   3'- caaGGCGaCGuCGCGCCG-----------CCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 4739 0.7 0.172387
Target:  5'- --aCCGCUGCAGCucguucgcgcaGCGGCaggaGGUCAAUg -3'
miRNA:   3'- caaGGCGACGUCG-----------CGCCG----CCGGUUGu -5'
27667 3' -60.3 NC_005882.1 + 27626 0.7 0.177176
Target:  5'- --gCCGC-GC-GCGCGGCGaccGCCGACGa -3'
miRNA:   3'- caaGGCGaCGuCGCGCCGC---CGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 25644 0.69 0.202924
Target:  5'- --gUUGCUcacGCAGCGCGGCGccgcgcGCCAGCc -3'
miRNA:   3'- caaGGCGA---CGUCGCGCCGC------CGGUUGu -5'
27667 3' -60.3 NC_005882.1 + 13088 0.68 0.214102
Target:  5'- -aUUCGaugucGCGGCuGCGGCGGCUGGCGu -3'
miRNA:   3'- caAGGCga---CGUCG-CGCCGCCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 12460 0.68 0.231858
Target:  5'- gGUUCuCGCggaaaGCGGcCGCGuGcCGGCCGGCGu -3'
miRNA:   3'- -CAAG-GCGa----CGUC-GCGC-C-GCCGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.