miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27667 3' -60.3 NC_005882.1 + 13724 0.66 0.339636
Target:  5'- --gCCGg-GCAucGCGCGGCcGGCCAAg- -3'
miRNA:   3'- caaGGCgaCGU--CGCGCCG-CCGGUUgu -5'
27667 3' -60.3 NC_005882.1 + 12554 0.67 0.250837
Target:  5'- ----nGCUGCGGCGaucggcgcacUGGCGGCUGGCGc -3'
miRNA:   3'- caaggCGACGUCGC----------GCCGCCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 27109 0.67 0.27108
Target:  5'- ---aUGCUGCuggcccGCGUccugGGCGGCCAGCu -3'
miRNA:   3'- caagGCGACGu-----CGCG----CCGCCGGUUGu -5'
27667 3' -60.3 NC_005882.1 + 28365 0.67 0.285292
Target:  5'- -gUCCGCgaUGC-GCGUGGCcGUCGACGc -3'
miRNA:   3'- caAGGCG--ACGuCGCGCCGcCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 15204 0.66 0.307702
Target:  5'- --cCCGCUGCucacGGCGCuccCGGUCGACGc -3'
miRNA:   3'- caaGGCGACG----UCGCGcc-GCCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 30521 0.66 0.307702
Target:  5'- -aUCaUGCUGC-GCGCGGCcgacaaggugacGGUCGACGu -3'
miRNA:   3'- caAG-GCGACGuCGCGCCG------------CCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 3972 0.66 0.322578
Target:  5'- cUUCCggGCUGCucuugaccucuccAGCGgggccaCGGCGGCCAugAu -3'
miRNA:   3'- cAAGG--CGACG-------------UCGC------GCCGCCGGUugU- -5'
27667 3' -60.3 NC_005882.1 + 10891 0.66 0.323375
Target:  5'- -gUUCGUcGCAGCGCGcGCGGgCGcauGCGg -3'
miRNA:   3'- caAGGCGaCGUCGCGC-CGCCgGU---UGU- -5'
27667 3' -60.3 NC_005882.1 + 14180 0.66 0.337984
Target:  5'- aUUCCGCcuggaggugcagGCAcGCGCGgaaGCGGCCGccGCGg -3'
miRNA:   3'- cAAGGCGa-----------CGU-CGCGC---CGCCGGU--UGU- -5'
27667 3' -60.3 NC_005882.1 + 2078 0.68 0.244372
Target:  5'- -aUCgGC-GCAGCGCGagcacGCGGCCggUg -3'
miRNA:   3'- caAGgCGaCGUCGCGC-----CGCCGGuuGu -5'
27667 3' -60.3 NC_005882.1 + 3276 0.7 0.163157
Target:  5'- --gCCGCcGUcGCGCGGCgagaucucuucGGCCAGCAc -3'
miRNA:   3'- caaGGCGaCGuCGCGCCG-----------CCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 27574 0.7 0.15871
Target:  5'- --gUCGCcGCGcGCGCGGCcGCCGGCAu -3'
miRNA:   3'- caaGGCGaCGU-CGCGCCGcCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 21279 0.76 0.058276
Target:  5'- ---gCGCucgaUGCGGCGaCGGCGGCCGGCGa -3'
miRNA:   3'- caagGCG----ACGUCGC-GCCGCCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 9487 0.74 0.078006
Target:  5'- --gCCGCUGCGauuggcGCGCuGGCGGCCGcaaGCAc -3'
miRNA:   3'- caaGGCGACGU------CGCG-CCGCCGGU---UGU- -5'
27667 3' -60.3 NC_005882.1 + 12519 0.74 0.080299
Target:  5'- cUUUCGC-GCGGCcagugugucgcgGCGGCGGCCGGCGc -3'
miRNA:   3'- cAAGGCGaCGUCG------------CGCCGCCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 22951 0.73 0.10705
Target:  5'- -aUUCGCcgGguGCGaCGGCGGCCAagGCGa -3'
miRNA:   3'- caAGGCGa-CguCGC-GCCGCCGGU--UGU- -5'
27667 3' -60.3 NC_005882.1 + 28052 0.71 0.13054
Target:  5'- ----aGCUGC-GCGCGGCGGUgAGCGc -3'
miRNA:   3'- caaggCGACGuCGCGCCGCCGgUUGU- -5'
27667 3' -60.3 NC_005882.1 + 26935 0.71 0.142
Target:  5'- uUUCgGCaUGgGGCGgGcGCGGCCGGCAa -3'
miRNA:   3'- cAAGgCG-ACgUCGCgC-CGCCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 22078 0.71 0.14602
Target:  5'- cUUCCGCccgccggacUGCAaaaagcuCGCGGCGGUCAGCGa -3'
miRNA:   3'- cAAGGCG---------ACGUc------GCGCCGCCGGUUGU- -5'
27667 3' -60.3 NC_005882.1 + 4911 0.7 0.154373
Target:  5'- uGUUCCGUgccGCGGCGCGGCaGGU--ACGu -3'
miRNA:   3'- -CAAGGCGa--CGUCGCGCCG-CCGguUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.