miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27669 5' -63.1 NC_005882.1 + 16043 0.66 0.284786
Target:  5'- gCGCUCGaAUGgGGCcucGACcGUGGCaaGGCg -3'
miRNA:   3'- -GCGAGC-UACgCCG---CUGcCGCCGg-CCG- -5'
27669 5' -63.1 NC_005882.1 + 6468 0.66 0.271162
Target:  5'- gGCugUCGcccagGCaGCG-CGcGCGGCCGGCc -3'
miRNA:   3'- gCG--AGCua---CGcCGCuGC-CGCCGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 12948 0.66 0.271162
Target:  5'- gCGC-CGGcgGCGGCGuuccacacGCGGacaaaGCCGGCa -3'
miRNA:   3'- -GCGaGCUa-CGCCGC--------UGCCgc---CGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 5054 0.66 0.269165
Target:  5'- uGCUCGAucucucgaagcgcaUGCugcgcuGGCGuauCGGCGugccGCCGGUa -3'
miRNA:   3'- gCGAGCU--------------ACG------CCGCu--GCCGC----CGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 26963 0.66 0.264549
Target:  5'- aGUUCGcgGCcGUGAUcgGGCGuGCCGGg -3'
miRNA:   3'- gCGAGCuaCGcCGCUG--CCGC-CGGCCg -5'
27669 5' -63.1 NC_005882.1 + 23428 0.66 0.264549
Target:  5'- aGCUCGucgGCgucacgGGCGuCGaGCGGCCgcugucGGCg -3'
miRNA:   3'- gCGAGCua-CG------CCGCuGC-CGCCGG------CCG- -5'
27669 5' -63.1 NC_005882.1 + 12026 0.66 0.263895
Target:  5'- aGCUCGgcGCGGUacgccagcgccucGGCGggcacuugcGCGGCCacgGGCg -3'
miRNA:   3'- gCGAGCuaCGCCG-------------CUGC---------CGCCGG---CCG- -5'
27669 5' -63.1 NC_005882.1 + 33052 0.66 0.251716
Target:  5'- uGCUCGAccUGCGccuucagguagcGCGuGCGGCcGCCGaGCu -3'
miRNA:   3'- gCGAGCU--ACGC------------CGC-UGCCGcCGGC-CG- -5'
27669 5' -63.1 NC_005882.1 + 12370 0.66 0.251716
Target:  5'- gGCcaugUCGA-GCGGUucaACGcCGGCCGGCa -3'
miRNA:   3'- gCG----AGCUaCGCCGc--UGCcGCCGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 12420 0.67 0.247968
Target:  5'- cCGCUCGAcaUGGcCGAaccagcguugccgauCGGCGccGCCGGCa -3'
miRNA:   3'- -GCGAGCUacGCC-GCU---------------GCCGC--CGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 22696 0.67 0.233434
Target:  5'- gCGCUCGAcGCGGUcuacgacuacGGCaGCGGgaCGGUg -3'
miRNA:   3'- -GCGAGCUaCGCCG----------CUGcCGCCg-GCCG- -5'
27669 5' -63.1 NC_005882.1 + 30622 0.67 0.233434
Target:  5'- gGCcggaUCGG-GCGGCGAUGGC-GCUGcGCu -3'
miRNA:   3'- gCG----AGCUaCGCCGCUGCCGcCGGC-CG- -5'
27669 5' -63.1 NC_005882.1 + 29728 0.67 0.232844
Target:  5'- gGUcagUCGAcgaGCGGCGacacgcuGCGGCuuuccgcacgGGCCGGCu -3'
miRNA:   3'- gCG---AGCUa--CGCCGC-------UGCCG----------CCGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 31583 0.67 0.227593
Target:  5'- gGCUCGAU-CGGgaaCGGCuGGCaGCCGGg -3'
miRNA:   3'- gCGAGCUAcGCC---GCUG-CCGcCGGCCg -5'
27669 5' -63.1 NC_005882.1 + 7701 0.67 0.227593
Target:  5'- gCGCUCGcggGCGGCGucgaggcuACGGaggauGGCgaCGGCg -3'
miRNA:   3'- -GCGAGCua-CGCCGC--------UGCCg----CCG--GCCG- -5'
27669 5' -63.1 NC_005882.1 + 25205 0.67 0.221311
Target:  5'- uGUUCGGcaucGUGGCGuuuuuCGGCuucgccuuccucgGGCCGGCc -3'
miRNA:   3'- gCGAGCUa---CGCCGCu----GCCG-------------CCGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 15234 0.67 0.216281
Target:  5'- cCGCUCGuacaaCGGCGAggacuuCGGaCGGaCUGGCg -3'
miRNA:   3'- -GCGAGCuac--GCCGCU------GCC-GCC-GGCCG- -5'
27669 5' -63.1 NC_005882.1 + 16983 0.67 0.216281
Target:  5'- aCGCUUGAaauaUGcCGGCGugaaacGCGcGCCGGCu -3'
miRNA:   3'- -GCGAGCU----AC-GCCGCugc---CGC-CGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 17859 0.67 0.210808
Target:  5'- uCGUgCGAgGCaucaaGGuCGA-GGCGGCCGGCg -3'
miRNA:   3'- -GCGaGCUaCG-----CC-GCUgCCGCCGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 9488 0.67 0.210808
Target:  5'- cCGCUgCGAU-UGGCGcGCuGGCGGCCGcaaGCa -3'
miRNA:   3'- -GCGA-GCUAcGCCGC-UG-CCGCCGGC---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.