miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27669 5' -63.1 NC_005882.1 + 1223 0.73 0.082297
Target:  5'- cCGCUCGAUccaucuaccgGCGGgaaccccuCGAU-GCGGCCGGCg -3'
miRNA:   3'- -GCGAGCUA----------CGCC--------GCUGcCGCCGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 2259 0.69 0.166738
Target:  5'- aCGCUgGAUGCGGUaGCGGCcGUCGa- -3'
miRNA:   3'- -GCGAgCUACGCCGcUGCCGcCGGCcg -5'
27669 5' -63.1 NC_005882.1 + 3331 0.81 0.02115
Target:  5'- -uCUCGccGC-GCGACGGCGGCCGGCc -3'
miRNA:   3'- gcGAGCuaCGcCGCUGCCGCCGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 5054 0.66 0.269165
Target:  5'- uGCUCGAucucucgaagcgcaUGCugcgcuGGCGuauCGGCGugccGCCGGUa -3'
miRNA:   3'- gCGAGCU--------------ACG------CCGCu--GCCGC----CGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 6468 0.66 0.271162
Target:  5'- gGCugUCGcccagGCaGCG-CGcGCGGCCGGCc -3'
miRNA:   3'- gCG--AGCua---CGcCGCuGC-CGCCGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 7701 0.67 0.227593
Target:  5'- gCGCUCGcggGCGGCGucgaggcuACGGaggauGGCgaCGGCg -3'
miRNA:   3'- -GCGAGCua-CGCCGC--------UGCCg----CCG--GCCG- -5'
27669 5' -63.1 NC_005882.1 + 8254 0.69 0.158137
Target:  5'- uCGCUgGGUgGCGGCaaGCGcCGGUCGGCu -3'
miRNA:   3'- -GCGAgCUA-CGCCGc-UGCcGCCGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 9488 0.67 0.210808
Target:  5'- cCGCUgCGAU-UGGCGcGCuGGCGGCCGcaaGCa -3'
miRNA:   3'- -GCGA-GCUAcGCCGC-UG-CCGCCGGC---CG- -5'
27669 5' -63.1 NC_005882.1 + 10678 0.68 0.185205
Target:  5'- cCGUgUCGGcaGCGGCGGaGGCGG-CGGCa -3'
miRNA:   3'- -GCG-AGCUa-CGCCGCUgCCGCCgGCCG- -5'
27669 5' -63.1 NC_005882.1 + 11695 0.73 0.089426
Target:  5'- gGCUCGAUcGCGGgcuuuuccCGuACGcGCGGCCGGa -3'
miRNA:   3'- gCGAGCUA-CGCC--------GC-UGC-CGCCGGCCg -5'
27669 5' -63.1 NC_005882.1 + 12026 0.66 0.263895
Target:  5'- aGCUCGgcGCGGUacgccagcgccucGGCGggcacuugcGCGGCCacgGGCg -3'
miRNA:   3'- gCGAGCuaCGCCG-------------CUGC---------CGCCGG---CCG- -5'
27669 5' -63.1 NC_005882.1 + 12208 0.75 0.06296
Target:  5'- gCGCUCG-UGCGGUacgaccggcaccucuGggagcgcaucACGGCGGCCGGUg -3'
miRNA:   3'- -GCGAGCuACGCCG---------------C----------UGCCGCCGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 12307 0.73 0.082297
Target:  5'- gGCUgGGUcuaucgcgaucaGCGcGUGACGGCuGCCGGCg -3'
miRNA:   3'- gCGAgCUA------------CGC-CGCUGCCGcCGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 12370 0.66 0.251716
Target:  5'- gGCcaugUCGA-GCGGUucaACGcCGGCCGGCa -3'
miRNA:   3'- gCG----AGCUaCGCCGc--UGCcGCCGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 12420 0.67 0.247968
Target:  5'- cCGCUCGAcaUGGcCGAaccagcguugccgauCGGCGccGCCGGCa -3'
miRNA:   3'- -GCGAGCUacGCC-GCU---------------GCCGC--CGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 12466 0.69 0.175756
Target:  5'- aGCcgCGGUucucgcggaaaGCGGCcGCGuGcCGGCCGGCg -3'
miRNA:   3'- gCGa-GCUA-----------CGCCGcUGC-C-GCCGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 12522 0.8 0.021765
Target:  5'- uCGCgCGGccagUGUGucGCGGCGGCGGCCGGCg -3'
miRNA:   3'- -GCGaGCU----ACGC--CGCUGCCGCCGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 12557 0.75 0.055639
Target:  5'- uGCggCGAU-CGGCGcACuGGCGGCUGGCg -3'
miRNA:   3'- gCGa-GCUAcGCCGC-UG-CCGCCGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 12692 0.68 0.185205
Target:  5'- gCGUUCGAgcuUGGCGACcuucGCGucGCCGGCa -3'
miRNA:   3'- -GCGAGCUac-GCCGCUGc---CGC--CGGCCG- -5'
27669 5' -63.1 NC_005882.1 + 12709 0.72 0.09193
Target:  5'- gCGCggaGAcgcaGCGcGCGGCGGCGcucGCCGGCg -3'
miRNA:   3'- -GCGag-CUa---CGC-CGCUGCCGC---CGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.