Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2767 | 3' | -53.2 | NC_001491.2 | + | 58510 | 0.66 | 0.958181 |
Target: 5'- aACGAccaUGGGGCG-CUGGUCcAUGAc-- -3' miRNA: 3'- -UGCU---ACCUCGCgGACCAGuUGCUuaa -5' |
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2767 | 3' | -53.2 | NC_001491.2 | + | 148581 | 0.66 | 0.95585 |
Target: 5'- cGCGGUGGcucugcgcGGCGCCcuccucaaaguccgGGUCGugGAAc- -3' miRNA: 3'- -UGCUACC--------UCGCGGa-------------CCAGUugCUUaa -5' |
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2767 | 3' | -53.2 | NC_001491.2 | + | 7558 | 0.66 | 0.950072 |
Target: 5'- gGCGGUGGaAGCGUUUGuuGUCGACGu--- -3' miRNA: 3'- -UGCUACC-UCGCGGAC--CAGUUGCuuaa -5' |
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2767 | 3' | -53.2 | NC_001491.2 | + | 79356 | 0.67 | 0.936052 |
Target: 5'- uCGAUGGucauuAGCGCCUccgcGGUcCAGCGGGg- -3' miRNA: 3'- uGCUACC-----UCGCGGA----CCA-GUUGCUUaa -5' |
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2767 | 3' | -53.2 | NC_001491.2 | + | 11304 | 0.68 | 0.913811 |
Target: 5'- -gGAUGGAGgGUUUGGcUCAAcCGGAUUa -3' miRNA: 3'- ugCUACCUCgCGGACC-AGUU-GCUUAA- -5' |
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2767 | 3' | -53.2 | NC_001491.2 | + | 114162 | 0.71 | 0.79671 |
Target: 5'- cACGAUGGAGCGCCUcccugCGGcCGAAa- -3' miRNA: 3'- -UGCUACCUCGCGGAcca--GUU-GCUUaa -5' |
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2767 | 3' | -53.2 | NC_001491.2 | + | 30886 | 0.71 | 0.772013 |
Target: 5'- uACGAUGGAggaaccggcuauggcGCGCgugUUGGUCAGCGGGg- -3' miRNA: 3'- -UGCUACCU---------------CGCG---GACCAGUUGCUUaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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