miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2767 5' -45 NC_001491.2 + 41405 0.66 0.999993
Target:  5'- aCAAugUCGUcUGACGAGGugGC-CUUGu -3'
miRNA:   3'- -GUUugAGUA-ACUGUUCCuuUGcGAGC- -5'
2767 5' -45 NC_001491.2 + 139810 0.66 0.999993
Target:  5'- -cGGCUCGggauCGGGGAGACGC-CGc -3'
miRNA:   3'- guUUGAGUaacuGUUCCUUUGCGaGC- -5'
2767 5' -45 NC_001491.2 + 133037 0.67 0.999986
Target:  5'- gCAAACUCAgagcUGGCGuuuAGGuacAUGCUCa -3'
miRNA:   3'- -GUUUGAGUa---ACUGU---UCCuu-UGCGAGc -5'
2767 5' -45 NC_001491.2 + 116658 0.67 0.999964
Target:  5'- uCAGACUCAggGAgCucGGGGACGCcugCGu -3'
miRNA:   3'- -GUUUGAGUaaCU-GuuCCUUUGCGa--GC- -5'
2767 5' -45 NC_001491.2 + 148783 0.68 0.999952
Target:  5'- gGGGCUCGgcGGCGGGG-AGC-CUCGg -3'
miRNA:   3'- gUUUGAGUaaCUGUUCCuUUGcGAGC- -5'
2767 5' -45 NC_001491.2 + 122281 0.68 0.999952
Target:  5'- -cGACUCAccGGCGAGcgcuuuugguGGGACGCUCa -3'
miRNA:   3'- guUUGAGUaaCUGUUC----------CUUUGCGAGc -5'
2767 5' -45 NC_001491.2 + 149063 0.68 0.999886
Target:  5'- ---uUUCGgccGCAGGGAGGCGCUCc -3'
miRNA:   3'- guuuGAGUaacUGUUCCUUUGCGAGc -5'
2767 5' -45 NC_001491.2 + 98434 0.68 0.999851
Target:  5'- cCAAgcGCUCAUUGGCG-GGAAACaGCa-- -3'
miRNA:   3'- -GUU--UGAGUAACUGUuCCUUUG-CGagc -5'
2767 5' -45 NC_001491.2 + 19794 0.71 0.998206
Target:  5'- --cGCUgCGUUGAUggGGAuAUGCUCc -3'
miRNA:   3'- guuUGA-GUAACUGuuCCUuUGCGAGc -5'
2767 5' -45 NC_001491.2 + 125082 0.72 0.995656
Target:  5'- -cAACUcCAgcGGCGAGGAGGCGC-CGa -3'
miRNA:   3'- guUUGA-GUaaCUGUUCCUUUGCGaGC- -5'
2767 5' -45 NC_001491.2 + 123491 0.72 0.994895
Target:  5'- -cGGCUgcgUGGCGGGGGAACaGCUCGg -3'
miRNA:   3'- guUUGAguaACUGUUCCUUUG-CGAGC- -5'
2767 5' -45 NC_001491.2 + 101355 0.75 0.968599
Target:  5'- aCAAGCUCAUgGGCGAGGGAGaggaGCUg- -3'
miRNA:   3'- -GUUUGAGUAaCUGUUCCUUUg---CGAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.