miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27670 3' -61.1 NC_005882.1 + 25976 0.66 0.357809
Target:  5'- gGCgacGCGGCGCugaaggaggcguucaACCGcGCgGCCuACGGCGg -3'
miRNA:   3'- -UGa--UGCCGCG---------------UGGC-CG-CGGcUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 35105 0.66 0.35448
Target:  5'- ---uUGGCGCACCGuuuagcgauGUGCCGAUGGu- -3'
miRNA:   3'- ugauGCCGCGUGGC---------CGCGGCUGCUgc -5'
27670 3' -61.1 NC_005882.1 + 6249 0.66 0.35448
Target:  5'- cGCUucguCGcGCGUcaacgagcuuugACCGGCGUCGAcaCGGCGu -3'
miRNA:   3'- -UGAu---GC-CGCG------------UGGCCGCGGCU--GCUGC- -5'
27670 3' -61.1 NC_005882.1 + 27659 0.66 0.35448
Target:  5'- cGCcgGCuGGCGCAUCGGUaGCCGGCucUGg -3'
miRNA:   3'- -UGa-UG-CCGCGUGGCCG-CGGCUGcuGC- -5'
27670 3' -61.1 NC_005882.1 + 12454 0.66 0.35448
Target:  5'- --cGCGGaaaGCgGCCGcGUGCCGGcCGGCGu -3'
miRNA:   3'- ugaUGCCg--CG-UGGC-CGCGGCU-GCUGC- -5'
27670 3' -61.1 NC_005882.1 + 18503 0.66 0.35448
Target:  5'- --cGCGGCGUAuuCCuuguuGCuGCCGAUGACGg -3'
miRNA:   3'- ugaUGCCGCGU--GGc----CG-CGGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 16659 0.66 0.35448
Target:  5'- ---uCGGCGCuACCGGUcuuGCCGGCuGCu -3'
miRNA:   3'- ugauGCCGCG-UGGCCG---CGGCUGcUGc -5'
27670 3' -61.1 NC_005882.1 + 12395 0.66 0.353651
Target:  5'- uGCcgauCGGCGcCGCCGGCaGCCGucacgcgcugaucGCGAUa -3'
miRNA:   3'- -UGau--GCCGC-GUGGCCG-CGGC-------------UGCUGc -5'
27670 3' -61.1 NC_005882.1 + 15469 0.66 0.351997
Target:  5'- cGCUACGGCGCAUCGcGCauccagcaagugauGCUGuccgaguCGugGu -3'
miRNA:   3'- -UGAUGCCGCGUGGC-CG--------------CGGCu------GCugC- -5'
27670 3' -61.1 NC_005882.1 + 18022 0.66 0.346251
Target:  5'- --cGCGGCGCgugACUGG-GUCGACGguGCGg -3'
miRNA:   3'- ugaUGCCGCG---UGGCCgCGGCUGC--UGC- -5'
27670 3' -61.1 NC_005882.1 + 33254 0.66 0.341381
Target:  5'- gGCgccgACGcaaGCACagggggauaacucgaCGGCGCUGGCGACGa -3'
miRNA:   3'- -UGa---UGCcg-CGUG---------------GCCGCGGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 28853 0.66 0.340574
Target:  5'- gAUUACGGCgguucucgcgagcgGCAuugcgcugucgauuCCGGUcguugcgGCCGACGACGu -3'
miRNA:   3'- -UGAUGCCG--------------CGU--------------GGCCG-------CGGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 8245 0.66 0.338161
Target:  5'- --gGCGGCaaGCGCCGGUcgGCUGAucauCGACa -3'
miRNA:   3'- ugaUGCCG--CGUGGCCG--CGGCU----GCUGc -5'
27670 3' -61.1 NC_005882.1 + 21687 0.66 0.338161
Target:  5'- gACgauCGGCGaC-CCGaGCGgcCCGGCGACGc -3'
miRNA:   3'- -UGau-GCCGC-GuGGC-CGC--GGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 21100 0.66 0.338161
Target:  5'- ---cCGGCGCGaaGGCGCuCGGCGuugcCGa -3'
miRNA:   3'- ugauGCCGCGUggCCGCG-GCUGCu---GC- -5'
27670 3' -61.1 NC_005882.1 + 20022 0.66 0.338161
Target:  5'- aACUGCGaauCGUcgauCCGGUGCUGACGAa- -3'
miRNA:   3'- -UGAUGCc--GCGu---GGCCGCGGCUGCUgc -5'
27670 3' -61.1 NC_005882.1 + 5263 0.66 0.338161
Target:  5'- gACcAUGaCGC-CCGGCaCCGACGACa -3'
miRNA:   3'- -UGaUGCcGCGuGGCCGcGGCUGCUGc -5'
27670 3' -61.1 NC_005882.1 + 21237 0.66 0.333373
Target:  5'- ---cCGGUGCGCCGGCcaugaccaggaugacGCCGAgcagguugacCGGCGc -3'
miRNA:   3'- ugauGCCGCGUGGCCG---------------CGGCU----------GCUGC- -5'
27670 3' -61.1 NC_005882.1 + 5075 0.66 0.330209
Target:  5'- uGCUGCgcuGGCGUAUCGGCguGCCGcCGGu- -3'
miRNA:   3'- -UGAUG---CCGCGUGGCCG--CGGCuGCUgc -5'
27670 3' -61.1 NC_005882.1 + 30322 0.66 0.322395
Target:  5'- --cGCGGUGCuccuggacaGCCGGUGC-GAgGACGg -3'
miRNA:   3'- ugaUGCCGCG---------UGGCCGCGgCUgCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.