Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 35105 | 0.66 | 0.35448 |
Target: 5'- ---uUGGCGCACCGuuuagcgauGUGCCGAUGGu- -3' miRNA: 3'- ugauGCCGCGUGGC---------CGCGGCUGCUgc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 20022 | 0.66 | 0.338161 |
Target: 5'- aACUGCGaauCGUcgauCCGGUGCUGACGAa- -3' miRNA: 3'- -UGAUGCc--GCGu---GGCCGCGGCUGCUgc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 21100 | 0.66 | 0.338161 |
Target: 5'- ---cCGGCGCGaaGGCGCuCGGCGuugcCGa -3' miRNA: 3'- ugauGCCGCGUggCCGCG-GCUGCu---GC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 21687 | 0.66 | 0.338161 |
Target: 5'- gACgauCGGCGaC-CCGaGCGgcCCGGCGACGc -3' miRNA: 3'- -UGau-GCCGC-GuGGC-CGC--GGCUGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 5263 | 0.66 | 0.338161 |
Target: 5'- gACcAUGaCGC-CCGGCaCCGACGACa -3' miRNA: 3'- -UGaUGCcGCGuGGCCGcGGCUGCUGc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 28853 | 0.66 | 0.340574 |
Target: 5'- gAUUACGGCgguucucgcgagcgGCAuugcgcugucgauuCCGGUcguugcgGCCGACGACGu -3' miRNA: 3'- -UGAUGCCG--------------CGU--------------GGCCG-------CGGCUGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 33254 | 0.66 | 0.341381 |
Target: 5'- gGCgccgACGcaaGCACagggggauaacucgaCGGCGCUGGCGACGa -3' miRNA: 3'- -UGa---UGCcg-CGUG---------------GCCGCGGCUGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 15469 | 0.66 | 0.351997 |
Target: 5'- cGCUACGGCGCAUCGcGCauccagcaagugauGCUGuccgaguCGugGu -3' miRNA: 3'- -UGAUGCCGCGUGGC-CG--------------CGGCu------GCugC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 6249 | 0.66 | 0.35448 |
Target: 5'- cGCUucguCGcGCGUcaacgagcuuugACCGGCGUCGAcaCGGCGu -3' miRNA: 3'- -UGAu---GC-CGCG------------UGGCCGCGGCU--GCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 5075 | 0.66 | 0.330209 |
Target: 5'- uGCUGCgcuGGCGUAUCGGCguGCCGcCGGu- -3' miRNA: 3'- -UGAUG---CCGCGUGGCCG--CGGCuGCUgc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 32752 | 0.66 | 0.322395 |
Target: 5'- gGCUGCGuuCGCGCCGGC-UCGAUG-CGu -3' miRNA: 3'- -UGAUGCc-GCGUGGCCGcGGCUGCuGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 31208 | 0.66 | 0.322395 |
Target: 5'- gACUACGaggcGCGCACUGGCaagacGCUGuaucCGGCGc -3' miRNA: 3'- -UGAUGC----CGCGUGGCCG-----CGGCu---GCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 30074 | 0.66 | 0.314721 |
Target: 5'- --cGCGGUGCcgccgccuuuGCCGGCcUgGACGGCGa -3' miRNA: 3'- ugaUGCCGCG----------UGGCCGcGgCUGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 25976 | 0.66 | 0.357809 |
Target: 5'- gGCgacGCGGCGCugaaggaggcguucaACCGcGCgGCCuACGGCGg -3' miRNA: 3'- -UGa--UGCCGCG---------------UGGC-CG-CGGcUGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 26204 | 0.66 | 0.314721 |
Target: 5'- cACUGcCGGCGCcuuCgCGGCcgacuucgagGCUGGCGAUGa -3' miRNA: 3'- -UGAU-GCCGCGu--G-GCCG----------CGGCUGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 12454 | 0.66 | 0.35448 |
Target: 5'- --cGCGGaaaGCgGCCGcGUGCCGGcCGGCGu -3' miRNA: 3'- ugaUGCCg--CG-UGGC-CGCGGCU-GCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 12246 | 0.66 | 0.312445 |
Target: 5'- --cACGGCG-GCCGGUGCaugcgagcgcauggCGAUGACGc -3' miRNA: 3'- ugaUGCCGCgUGGCCGCG--------------GCUGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 25652 | 0.66 | 0.313961 |
Target: 5'- gGCUgccACGGcCGCGCCcguaaucGGCGCUGuuCGGCa -3' miRNA: 3'- -UGA---UGCC-GCGUGG-------CCGCGGCu-GCUGc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 21466 | 0.66 | 0.321622 |
Target: 5'- aGCU-CGGUGCGCCaGGCGgaggaaaUCGuCGACGc -3' miRNA: 3'- -UGAuGCCGCGUGG-CCGC-------GGCuGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 30322 | 0.66 | 0.322395 |
Target: 5'- --cGCGGUGCuccuggacaGCCGGUGC-GAgGACGg -3' miRNA: 3'- ugaUGCCGCG---------UGGCCGCGgCUgCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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