Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 18503 | 0.66 | 0.35448 |
Target: 5'- --cGCGGCGUAuuCCuuguuGCuGCCGAUGACGg -3' miRNA: 3'- ugaUGCCGCGU--GGc----CG-CGGCUGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 25976 | 0.66 | 0.357809 |
Target: 5'- gGCgacGCGGCGCugaaggaggcguucaACCGcGCgGCCuACGGCGg -3' miRNA: 3'- -UGa--UGCCGCG---------------UGGC-CG-CGGcUGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 21237 | 0.66 | 0.333373 |
Target: 5'- ---cCGGUGCGCCGGCcaugaccaggaugacGCCGAgcagguugacCGGCGc -3' miRNA: 3'- ugauGCCGCGUGGCCG---------------CGGCU----------GCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 12454 | 0.66 | 0.35448 |
Target: 5'- --cGCGGaaaGCgGCCGcGUGCCGGcCGGCGu -3' miRNA: 3'- ugaUGCCg--CG-UGGC-CGCGGCU-GCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 26204 | 0.66 | 0.314721 |
Target: 5'- cACUGcCGGCGCcuuCgCGGCcgacuucgagGCUGGCGAUGa -3' miRNA: 3'- -UGAU-GCCGCGu--G-GCCG----------CGGCUGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 16659 | 0.66 | 0.35448 |
Target: 5'- ---uCGGCGCuACCGGUcuuGCCGGCuGCu -3' miRNA: 3'- ugauGCCGCG-UGGCCG---CGGCUGcUGc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 27659 | 0.66 | 0.35448 |
Target: 5'- cGCcgGCuGGCGCAUCGGUaGCCGGCucUGg -3' miRNA: 3'- -UGa-UG-CCGCGUGGCCG-CGGCUGcuGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 30074 | 0.66 | 0.314721 |
Target: 5'- --cGCGGUGCcgccgccuuuGCCGGCcUgGACGGCGa -3' miRNA: 3'- ugaUGCCGCG----------UGGCCGcGgCUGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 1620 | 0.67 | 0.27158 |
Target: 5'- aGCUgcGCGGCGaCGCCcgaugcgaugGGCGUCGacccguGCGGCGa -3' miRNA: 3'- -UGA--UGCCGC-GUGG----------CCGCGGC------UGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 32728 | 0.67 | 0.285409 |
Target: 5'- --aGCGGCGUugCuGCGCaCGACGuuGg -3' miRNA: 3'- ugaUGCCGCGugGcCGCG-GCUGCugC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 27585 | 0.67 | 0.29253 |
Target: 5'- --cGCGGC-CGCCGGCa-UGGCGACGc -3' miRNA: 3'- ugaUGCCGcGUGGCCGcgGCUGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 26145 | 0.67 | 0.299788 |
Target: 5'- ---uCGGcCGCGaaGGCGCCGgcagugGCGACGa -3' miRNA: 3'- ugauGCC-GCGUggCCGCGGC------UGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 19920 | 0.67 | 0.299788 |
Target: 5'- aGCU-CGGCGCGCuuCGGaucgacguucuCGCCGuacuCGACGg -3' miRNA: 3'- -UGAuGCCGCGUG--GCC-----------GCGGCu---GCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 29173 | 0.67 | 0.299788 |
Target: 5'- gGCUAcgcCGGCGCGCCGuuGCUcGCGuGCGg -3' miRNA: 3'- -UGAU---GCCGCGUGGCcgCGGcUGC-UGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 12599 | 0.67 | 0.299788 |
Target: 5'- --cGCcGCaGCGCCGGcCGCCGccGCGACa -3' miRNA: 3'- ugaUGcCG-CGUGGCC-GCGGC--UGCUGc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 21516 | 0.67 | 0.29253 |
Target: 5'- ---cUGGCGCACCGaGCuuUCGACGAUGu -3' miRNA: 3'- ugauGCCGCGUGGC-CGc-GGCUGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 20805 | 0.67 | 0.307185 |
Target: 5'- -aUACGGCGUACgcuguUGGcCGCCGGCuGCa -3' miRNA: 3'- ugAUGCCGCGUG-----GCC-GCGGCUGcUGc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 17146 | 0.67 | 0.307185 |
Target: 5'- --aACGGCGCGa--GUGCCGACGAg- -3' miRNA: 3'- ugaUGCCGCGUggcCGCGGCUGCUgc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 19048 | 0.67 | 0.27158 |
Target: 5'- cACgcCGGCGCguugucGCgCGGaugGCCGAUGACGa -3' miRNA: 3'- -UGauGCCGCG------UG-GCCg--CGGCUGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 17165 | 0.67 | 0.27158 |
Target: 5'- --aGCGGCGCgACCaGCGCCuGCG-CGu -3' miRNA: 3'- ugaUGCCGCG-UGGcCGCGGcUGCuGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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