Results 1 - 20 of 85 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 21418 | 1.08 | 0.000212 |
Target: 5'- gACUACGGCGCACCGGCGCCGACGACGa -3' miRNA: 3'- -UGAUGCCGCGUGGCCGCGGCUGCUGC- -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 13076 | 0.84 | 0.015727 |
Target: 5'- gGCUGCGGCG-GCUGGCGUCGACGugGu -3' miRNA: 3'- -UGAUGCCGCgUGGCCGCGGCUGCugC- -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 19806 | 0.82 | 0.021038 |
Target: 5'- --cGCGaGCGCGCCGGCGUgaCGACGACGg -3' miRNA: 3'- ugaUGC-CGCGUGGCCGCG--GCUGCUGC- -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 22474 | 0.79 | 0.037531 |
Target: 5'- cGCUGgGGCGCGCgGGCuugGUCGACGGCGc -3' miRNA: 3'- -UGAUgCCGCGUGgCCG---CGGCUGCUGC- -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 12560 | 0.77 | 0.057694 |
Target: 5'- gGCgauCGGCGCACUGGCGgCUGGCG-CGg -3' miRNA: 3'- -UGau-GCCGCGUGGCCGC-GGCUGCuGC- -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 9489 | 0.77 | 0.059361 |
Target: 5'- cGCUGCgauuGGCGCGCUGGCGgCCGcaagcACGACGc -3' miRNA: 3'- -UGAUG----CCGCGUGGCCGC-GGC-----UGCUGC- -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 12971 | 0.77 | 0.059361 |
Target: 5'- cACUggucGCGG-GCACaccauCGGCGCCGGCGGCGg -3' miRNA: 3'- -UGA----UGCCgCGUG-----GCCGCGGCUGCUGC- -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 11985 | 0.76 | 0.066508 |
Target: 5'- gGCcACgGGCGCGgCGGCGCCGagcaacGCGACGa -3' miRNA: 3'- -UGaUG-CCGCGUgGCCGCGGC------UGCUGC- -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 21286 | 0.76 | 0.064647 |
Target: 5'- -aUGCGGCGa--CGGCgGCCGGCGACGu -3' miRNA: 3'- ugAUGCCGCgugGCCG-CGGCUGCUGC- -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 6644 | 0.75 | 0.072406 |
Target: 5'- -gUGCGGCGCGCCGuGCGUCu-CGGCGu -3' miRNA: 3'- ugAUGCCGCGUGGC-CGCGGcuGCUGC- -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 29231 | 0.75 | 0.081055 |
Target: 5'- aGCaACGGCGCGCCGGCGuaGcCGAUc -3' miRNA: 3'- -UGaUGCCGCGUGGCCGCggCuGCUGc -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 31392 | 0.73 | 0.107188 |
Target: 5'- gGCUGcCGGCGCAgCCcGCGaaGACGACGc -3' miRNA: 3'- -UGAU-GCCGCGU-GGcCGCggCUGCUGC- -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 19167 | 0.73 | 0.115502 |
Target: 5'- aGCUgGCGcugaucuucuuguaGCGC-CCGGCGCCGACGAg- -3' miRNA: 3'- -UGA-UGC--------------CGCGuGGCCGCGGCUGCUgc -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 13012 | 0.72 | 0.123055 |
Target: 5'- gGCgucauCGGCGCggGCCGGCGCaacagcucCGGCGGCa -3' miRNA: 3'- -UGau---GCCGCG--UGGCCGCG--------GCUGCUGc -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 12887 | 0.72 | 0.119716 |
Target: 5'- cCUGaagaGGCGCAuCCGGCGCCG--GGCGg -3' miRNA: 3'- uGAUg---CCGCGU-GGCCGCGGCugCUGC- -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 17810 | 0.71 | 0.153024 |
Target: 5'- gGCUGgGGC-UGCCGGUGCCG-CGugGu -3' miRNA: 3'- -UGAUgCCGcGUGGCCGCGGCuGCugC- -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 30064 | 0.71 | 0.16149 |
Target: 5'- uCUACGGCGuCACC-GCGaaaGGCGACGu -3' miRNA: 3'- uGAUGCCGC-GUGGcCGCgg-CUGCUGC- -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 12600 | 0.71 | 0.16588 |
Target: 5'- --gGCGGCuaucaCGCCGGUgcgcuuGCCGGCGACGc -3' miRNA: 3'- ugaUGCCGc----GUGGCCG------CGGCUGCUGC- -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 12328 | 0.71 | 0.153024 |
Target: 5'- cGCgugACGGCuGcCGgCGGCGCCGAuCGGCa -3' miRNA: 3'- -UGa--UGCCG-C-GUgGCCGCGGCU-GCUGc -5' |
|||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 23428 | 0.71 | 0.16149 |
Target: 5'- aGCUcguCGGCGuCACgGGCGUCGAgCGGCc -3' miRNA: 3'- -UGAu--GCCGC-GUGgCCGCGGCU-GCUGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home