miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27670 3' -61.1 NC_005882.1 + 21418 1.08 0.000212
Target:  5'- gACUACGGCGCACCGGCGCCGACGACGa -3'
miRNA:   3'- -UGAUGCCGCGUGGCCGCGGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 13076 0.84 0.015727
Target:  5'- gGCUGCGGCG-GCUGGCGUCGACGugGu -3'
miRNA:   3'- -UGAUGCCGCgUGGCCGCGGCUGCugC- -5'
27670 3' -61.1 NC_005882.1 + 19806 0.82 0.021038
Target:  5'- --cGCGaGCGCGCCGGCGUgaCGACGACGg -3'
miRNA:   3'- ugaUGC-CGCGUGGCCGCG--GCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 22474 0.79 0.037531
Target:  5'- cGCUGgGGCGCGCgGGCuugGUCGACGGCGc -3'
miRNA:   3'- -UGAUgCCGCGUGgCCG---CGGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 12560 0.77 0.057694
Target:  5'- gGCgauCGGCGCACUGGCGgCUGGCG-CGg -3'
miRNA:   3'- -UGau-GCCGCGUGGCCGC-GGCUGCuGC- -5'
27670 3' -61.1 NC_005882.1 + 9489 0.77 0.059361
Target:  5'- cGCUGCgauuGGCGCGCUGGCGgCCGcaagcACGACGc -3'
miRNA:   3'- -UGAUG----CCGCGUGGCCGC-GGC-----UGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 12971 0.77 0.059361
Target:  5'- cACUggucGCGG-GCACaccauCGGCGCCGGCGGCGg -3'
miRNA:   3'- -UGA----UGCCgCGUG-----GCCGCGGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 21286 0.76 0.064647
Target:  5'- -aUGCGGCGa--CGGCgGCCGGCGACGu -3'
miRNA:   3'- ugAUGCCGCgugGCCG-CGGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 11985 0.76 0.066508
Target:  5'- gGCcACgGGCGCGgCGGCGCCGagcaacGCGACGa -3'
miRNA:   3'- -UGaUG-CCGCGUgGCCGCGGC------UGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 6644 0.75 0.072406
Target:  5'- -gUGCGGCGCGCCGuGCGUCu-CGGCGu -3'
miRNA:   3'- ugAUGCCGCGUGGC-CGCGGcuGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 29231 0.75 0.081055
Target:  5'- aGCaACGGCGCGCCGGCGuaGcCGAUc -3'
miRNA:   3'- -UGaUGCCGCGUGGCCGCggCuGCUGc -5'
27670 3' -61.1 NC_005882.1 + 31392 0.73 0.107188
Target:  5'- gGCUGcCGGCGCAgCCcGCGaaGACGACGc -3'
miRNA:   3'- -UGAU-GCCGCGU-GGcCGCggCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 19167 0.73 0.115502
Target:  5'- aGCUgGCGcugaucuucuuguaGCGC-CCGGCGCCGACGAg- -3'
miRNA:   3'- -UGA-UGC--------------CGCGuGGCCGCGGCUGCUgc -5'
27670 3' -61.1 NC_005882.1 + 12887 0.72 0.119716
Target:  5'- cCUGaagaGGCGCAuCCGGCGCCG--GGCGg -3'
miRNA:   3'- uGAUg---CCGCGU-GGCCGCGGCugCUGC- -5'
27670 3' -61.1 NC_005882.1 + 13012 0.72 0.123055
Target:  5'- gGCgucauCGGCGCggGCCGGCGCaacagcucCGGCGGCa -3'
miRNA:   3'- -UGau---GCCGCG--UGGCCGCG--------GCUGCUGc -5'
27670 3' -61.1 NC_005882.1 + 27634 0.71 0.148944
Target:  5'- uGCcgGCGGCcgcGCGCgCGGCGaCCGcCGACGa -3'
miRNA:   3'- -UGa-UGCCG---CGUG-GCCGC-GGCuGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 17810 0.71 0.153024
Target:  5'- gGCUGgGGC-UGCCGGUGCCG-CGugGu -3'
miRNA:   3'- -UGAUgCCGcGUGGCCGCGGCuGCugC- -5'
27670 3' -61.1 NC_005882.1 + 12328 0.71 0.153024
Target:  5'- cGCgugACGGCuGcCGgCGGCGCCGAuCGGCa -3'
miRNA:   3'- -UGa--UGCCG-C-GUgGCCGCGGCU-GCUGc -5'
27670 3' -61.1 NC_005882.1 + 3356 0.71 0.157206
Target:  5'- gGCUACcGCGUGCUGGCcgaagagaucucGCCGcGCGACGg -3'
miRNA:   3'- -UGAUGcCGCGUGGCCG------------CGGC-UGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 23428 0.71 0.16149
Target:  5'- aGCUcguCGGCGuCACgGGCGUCGAgCGGCc -3'
miRNA:   3'- -UGAu--GCCGC-GUGgCCGCGGCU-GCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.