miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27670 3' -61.1 NC_005882.1 + 23428 0.71 0.16149
Target:  5'- aGCUcguCGGCGuCACgGGCGUCGAgCGGCc -3'
miRNA:   3'- -UGAu--GCCGC-GUGgCCGCGGCU-GCUGc -5'
27670 3' -61.1 NC_005882.1 + 12600 0.71 0.16588
Target:  5'- --gGCGGCuaucaCGCCGGUgcgcuuGCCGGCGACGc -3'
miRNA:   3'- ugaUGCCGc----GUGGCCG------CGGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 22709 0.7 0.169922
Target:  5'- aGCUGCGGgccgaacUGCGCC-GCGUCGACGuCGg -3'
miRNA:   3'- -UGAUGCC-------GCGUGGcCGCGGCUGCuGC- -5'
27670 3' -61.1 NC_005882.1 + 12127 0.7 0.170376
Target:  5'- cGCUgACGGCGU-CCGcGCGCCaGCGGCu -3'
miRNA:   3'- -UGA-UGCCGCGuGGC-CGCGGcUGCUGc -5'
27670 3' -61.1 NC_005882.1 + 26558 0.7 0.170376
Target:  5'- gACUACGuGCGCcgcgcggaGCUGGCGaCCGucGCGugGg -3'
miRNA:   3'- -UGAUGC-CGCG--------UGGCCGC-GGC--UGCugC- -5'
27670 3' -61.1 NC_005882.1 + 12947 0.7 0.170376
Target:  5'- aGCUGuuGCGCcgGCCcGCGCCGAUGACc -3'
miRNA:   3'- -UGAUgcCGCG--UGGcCGCGGCUGCUGc -5'
27670 3' -61.1 NC_005882.1 + 21166 0.7 0.174516
Target:  5'- uGCU-CGGCGUcauccuggucaugGCCGGCGCacCGGuCGACGa -3'
miRNA:   3'- -UGAuGCCGCG-------------UGGCCGCG--GCU-GCUGC- -5'
27670 3' -61.1 NC_005882.1 + 23087 0.7 0.184525
Target:  5'- cAUUcCGGCuGCGuucaCGGCGCCGAUGAUGu -3'
miRNA:   3'- -UGAuGCCG-CGUg---GCCGCGGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 29654 0.7 0.184525
Target:  5'- uCUACGGCGUgACgGGUGacuCCGugGGCGu -3'
miRNA:   3'- uGAUGCCGCG-UGgCCGC---GGCugCUGC- -5'
27670 3' -61.1 NC_005882.1 + 13515 0.69 0.1997
Target:  5'- --cGCGGCGCACCuuGGCGUgGuCGAUu -3'
miRNA:   3'- ugaUGCCGCGUGG--CCGCGgCuGCUGc -5'
27670 3' -61.1 NC_005882.1 + 34642 0.69 0.210412
Target:  5'- --cGCGGCacCGCCGaGCGCCGucuCGACa -3'
miRNA:   3'- ugaUGCCGc-GUGGC-CGCGGCu--GCUGc -5'
27670 3' -61.1 NC_005882.1 + 12897 0.69 0.215952
Target:  5'- --aACGcCGcCGCCGGCGCCGAUGGu- -3'
miRNA:   3'- ugaUGCcGC-GUGGCCGCGGCUGCUgc -5'
27670 3' -61.1 NC_005882.1 + 702 0.69 0.22682
Target:  5'- cACUGaucgagcUGGcCGaCAUCGGCGCCGACcaGGCGa -3'
miRNA:   3'- -UGAU-------GCC-GC-GUGGCCGCGGCUG--CUGC- -5'
27670 3' -61.1 NC_005882.1 + 16064 0.69 0.227405
Target:  5'- uGCgGCGGCGCACgCaccCGCCGACGuGCGc -3'
miRNA:   3'- -UGaUGCCGCGUG-Gcc-GCGGCUGC-UGC- -5'
27670 3' -61.1 NC_005882.1 + 22017 0.68 0.233322
Target:  5'- aGCUcaACGGcCGCGgCGGUGCCauCGACGu -3'
miRNA:   3'- -UGA--UGCC-GCGUgGCCGCGGcuGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 12723 0.68 0.238758
Target:  5'- cGCgcgGCGGCGCucGCCGGCgaccuguucGCCGAgaaagccCGGCa -3'
miRNA:   3'- -UGa--UGCCGCG--UGGCCG---------CGGCU-------GCUGc -5'
27670 3' -61.1 NC_005882.1 + 10105 0.68 0.239369
Target:  5'- --gGCGGCGC-UUGGUGCgGugGACu -3'
miRNA:   3'- ugaUGCCGCGuGGCCGCGgCugCUGc -5'
27670 3' -61.1 NC_005882.1 + 3391 0.68 0.245545
Target:  5'- uGCUgaACGcuuGCGCGCgGGCGCUGcGCGGCc -3'
miRNA:   3'- -UGA--UGC---CGCGUGgCCGCGGC-UGCUGc -5'
27670 3' -61.1 NC_005882.1 + 32210 0.68 0.245545
Target:  5'- uGC-ACGGCGCgacugaGCUGGCGCgGgACGAUa -3'
miRNA:   3'- -UGaUGCCGCG------UGGCCGCGgC-UGCUGc -5'
27670 3' -61.1 NC_005882.1 + 12026 0.68 0.245545
Target:  5'- aGCU-CGGCGCgguacGCCaGCGCCu-CGGCGg -3'
miRNA:   3'- -UGAuGCCGCG-----UGGcCGCGGcuGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.