miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27670 3' -61.1 NC_005882.1 + 32752 0.66 0.322395
Target:  5'- gGCUGCGuuCGCGCCGGC-UCGAUG-CGu -3'
miRNA:   3'- -UGAUGCc-GCGUGGCCGcGGCUGCuGC- -5'
27670 3' -61.1 NC_005882.1 + 30322 0.66 0.322395
Target:  5'- --cGCGGUGCuccuggacaGCCGGUGC-GAgGACGg -3'
miRNA:   3'- ugaUGCCGCG---------UGGCCGCGgCUgCUGC- -5'
27670 3' -61.1 NC_005882.1 + 21466 0.66 0.321622
Target:  5'- aGCU-CGGUGCGCCaGGCGgaggaaaUCGuCGACGc -3'
miRNA:   3'- -UGAuGCCGCGUGG-CCGC-------GGCuGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 26204 0.66 0.314721
Target:  5'- cACUGcCGGCGCcuuCgCGGCcgacuucgagGCUGGCGAUGa -3'
miRNA:   3'- -UGAU-GCCGCGu--G-GCCG----------CGGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 30074 0.66 0.314721
Target:  5'- --cGCGGUGCcgccgccuuuGCCGGCcUgGACGGCGa -3'
miRNA:   3'- ugaUGCCGCG----------UGGCCGcGgCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 20393 0.66 0.314721
Target:  5'- --cGCGGCGCAacuggaucgcuUCGGuCGCUgucugGACGGCGg -3'
miRNA:   3'- ugaUGCCGCGU-----------GGCC-GCGG-----CUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 25652 0.66 0.313961
Target:  5'- gGCUgccACGGcCGCGCCcguaaucGGCGCUGuuCGGCa -3'
miRNA:   3'- -UGA---UGCC-GCGUGG-------CCGCGGCu-GCUGc -5'
27670 3' -61.1 NC_005882.1 + 12246 0.66 0.312445
Target:  5'- --cACGGCG-GCCGGUGCaugcgagcgcauggCGAUGACGc -3'
miRNA:   3'- ugaUGCCGCgUGGCCGCG--------------GCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 20805 0.67 0.307185
Target:  5'- -aUACGGCGUACgcuguUGGcCGCCGGCuGCa -3'
miRNA:   3'- ugAUGCCGCGUG-----GCC-GCGGCUGcUGc -5'
27670 3' -61.1 NC_005882.1 + 17146 0.67 0.307185
Target:  5'- --aACGGCGCGa--GUGCCGACGAg- -3'
miRNA:   3'- ugaUGCCGCGUggcCGCGGCUGCUgc -5'
27670 3' -61.1 NC_005882.1 + 19920 0.67 0.299788
Target:  5'- aGCU-CGGCGCGCuuCGGaucgacguucuCGCCGuacuCGACGg -3'
miRNA:   3'- -UGAuGCCGCGUG--GCC-----------GCGGCu---GCUGC- -5'
27670 3' -61.1 NC_005882.1 + 26145 0.67 0.299788
Target:  5'- ---uCGGcCGCGaaGGCGCCGgcagugGCGACGa -3'
miRNA:   3'- ugauGCC-GCGUggCCGCGGC------UGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 29173 0.67 0.299788
Target:  5'- gGCUAcgcCGGCGCGCCGuuGCUcGCGuGCGg -3'
miRNA:   3'- -UGAU---GCCGCGUGGCcgCGGcUGC-UGC- -5'
27670 3' -61.1 NC_005882.1 + 12599 0.67 0.299788
Target:  5'- --cGCcGCaGCGCCGGcCGCCGccGCGACa -3'
miRNA:   3'- ugaUGcCG-CGUGGCC-GCGGC--UGCUGc -5'
27670 3' -61.1 NC_005882.1 + 27585 0.67 0.29253
Target:  5'- --cGCGGC-CGCCGGCa-UGGCGACGc -3'
miRNA:   3'- ugaUGCCGcGUGGCCGcgGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 21516 0.67 0.29253
Target:  5'- ---cUGGCGCACCGaGCuuUCGACGAUGu -3'
miRNA:   3'- ugauGCCGCGUGGC-CGc-GGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 32728 0.67 0.285409
Target:  5'- --aGCGGCGUugCuGCGCaCGACGuuGg -3'
miRNA:   3'- ugaUGCCGCGugGcCGCG-GCUGCugC- -5'
27670 3' -61.1 NC_005882.1 + 19048 0.67 0.27158
Target:  5'- cACgcCGGCGCguugucGCgCGGaugGCCGAUGACGa -3'
miRNA:   3'- -UGauGCCGCG------UG-GCCg--CGGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 1620 0.67 0.27158
Target:  5'- aGCUgcGCGGCGaCGCCcgaugcgaugGGCGUCGacccguGCGGCGa -3'
miRNA:   3'- -UGA--UGCCGC-GUGG----------CCGCGGC------UGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 17165 0.67 0.27158
Target:  5'- --aGCGGCGCgACCaGCGCCuGCG-CGu -3'
miRNA:   3'- ugaUGCCGCG-UGGcCGCGGcUGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.