Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
27670 | 3' | -61.1 | NC_005882.1 | + | 23222 | 0.68 | 0.26487 |
Target: 5'- cGCgcaGGCGCugGCCgGGCGCgGGcCGGCGg -3' miRNA: 3'- -UGaugCCGCG--UGG-CCGCGgCU-GCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 29994 | 0.68 | 0.26487 |
Target: 5'- cGCU-CGGCGCucgccguccagGCCGGCaaaGgCGGCGGCa -3' miRNA: 3'- -UGAuGCCGCG-----------UGGCCG---CgGCUGCUGc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 14421 | 0.68 | 0.262883 |
Target: 5'- gACguguCGGCGCACCauuucugcugauacGGCaGCagGACGGCGg -3' miRNA: 3'- -UGau--GCCGCGUGG--------------CCG-CGg-CUGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 32064 | 0.68 | 0.251854 |
Target: 5'- --cGCGuaGUcgACCGGCGUCGGCGAuCGg -3' miRNA: 3'- ugaUGCcgCG--UGGCCGCGGCUGCU-GC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 6696 | 0.68 | 0.251854 |
Target: 5'- cGC-ACGGCGCGCCGca--CGACGACu -3' miRNA: 3'- -UGaUGCCGCGUGGCcgcgGCUGCUGc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 12026 | 0.68 | 0.245545 |
Target: 5'- aGCU-CGGCGCgguacGCCaGCGCCu-CGGCGg -3' miRNA: 3'- -UGAuGCCGCG-----UGGcCGCGGcuGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 3391 | 0.68 | 0.245545 |
Target: 5'- uGCUgaACGcuuGCGCGCgGGCGCUGcGCGGCc -3' miRNA: 3'- -UGA--UGC---CGCGUGgCCGCGGC-UGCUGc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 32210 | 0.68 | 0.245545 |
Target: 5'- uGC-ACGGCGCgacugaGCUGGCGCgGgACGAUa -3' miRNA: 3'- -UGaUGCCGCG------UGGCCGCGgC-UGCUGc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 10105 | 0.68 | 0.239369 |
Target: 5'- --gGCGGCGC-UUGGUGCgGugGACu -3' miRNA: 3'- ugaUGCCGCGuGGCCGCGgCugCUGc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 12723 | 0.68 | 0.238758 |
Target: 5'- cGCgcgGCGGCGCucGCCGGCgaccuguucGCCGAgaaagccCGGCa -3' miRNA: 3'- -UGa--UGCCGCG--UGGCCG---------CGGCU-------GCUGc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 22017 | 0.68 | 0.233322 |
Target: 5'- aGCUcaACGGcCGCGgCGGUGCCauCGACGu -3' miRNA: 3'- -UGA--UGCC-GCGUgGCCGCGGcuGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 16064 | 0.69 | 0.227405 |
Target: 5'- uGCgGCGGCGCACgCaccCGCCGACGuGCGc -3' miRNA: 3'- -UGaUGCCGCGUG-Gcc-GCGGCUGC-UGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 702 | 0.69 | 0.22682 |
Target: 5'- cACUGaucgagcUGGcCGaCAUCGGCGCCGACcaGGCGa -3' miRNA: 3'- -UGAU-------GCC-GC-GUGGCCGCGGCUG--CUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 12897 | 0.69 | 0.215952 |
Target: 5'- --aACGcCGcCGCCGGCGCCGAUGGu- -3' miRNA: 3'- ugaUGCcGC-GUGGCCGCGGCUGCUgc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 34642 | 0.69 | 0.210412 |
Target: 5'- --cGCGGCacCGCCGaGCGCCGucuCGACa -3' miRNA: 3'- ugaUGCCGc-GUGGC-CGCGGCu--GCUGc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 13515 | 0.69 | 0.1997 |
Target: 5'- --cGCGGCGCACCuuGGCGUgGuCGAUu -3' miRNA: 3'- ugaUGCCGCGUGG--CCGCGgCuGCUGc -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 29654 | 0.7 | 0.184525 |
Target: 5'- uCUACGGCGUgACgGGUGacuCCGugGGCGu -3' miRNA: 3'- uGAUGCCGCG-UGgCCGC---GGCugCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 23087 | 0.7 | 0.184525 |
Target: 5'- cAUUcCGGCuGCGuucaCGGCGCCGAUGAUGu -3' miRNA: 3'- -UGAuGCCG-CGUg---GCCGCGGCUGCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 21166 | 0.7 | 0.174516 |
Target: 5'- uGCU-CGGCGUcauccuggucaugGCCGGCGCacCGGuCGACGa -3' miRNA: 3'- -UGAuGCCGCG-------------UGGCCGCG--GCU-GCUGC- -5' |
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27670 | 3' | -61.1 | NC_005882.1 | + | 12947 | 0.7 | 0.170376 |
Target: 5'- aGCUGuuGCGCcgGCCcGCGCCGAUGACc -3' miRNA: 3'- -UGAUgcCGCG--UGGcCGCGGCUGCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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