miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27670 3' -61.1 NC_005882.1 + 702 0.69 0.22682
Target:  5'- cACUGaucgagcUGGcCGaCAUCGGCGCCGACcaGGCGa -3'
miRNA:   3'- -UGAU-------GCC-GC-GUGGCCGCGGCUG--CUGC- -5'
27670 3' -61.1 NC_005882.1 + 1620 0.67 0.27158
Target:  5'- aGCUgcGCGGCGaCGCCcgaugcgaugGGCGUCGacccguGCGGCGa -3'
miRNA:   3'- -UGA--UGCCGC-GUGG----------CCGCGGC------UGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 3356 0.71 0.157206
Target:  5'- gGCUACcGCGUGCUGGCcgaagagaucucGCCGcGCGACGg -3'
miRNA:   3'- -UGAUGcCGCGUGGCCG------------CGGC-UGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 3391 0.68 0.245545
Target:  5'- uGCUgaACGcuuGCGCGCgGGCGCUGcGCGGCc -3'
miRNA:   3'- -UGA--UGC---CGCGUGgCCGCGGC-UGCUGc -5'
27670 3' -61.1 NC_005882.1 + 5075 0.66 0.330209
Target:  5'- uGCUGCgcuGGCGUAUCGGCguGCCGcCGGu- -3'
miRNA:   3'- -UGAUG---CCGCGUGGCCG--CGGCuGCUgc -5'
27670 3' -61.1 NC_005882.1 + 5263 0.66 0.338161
Target:  5'- gACcAUGaCGC-CCGGCaCCGACGACa -3'
miRNA:   3'- -UGaUGCcGCGuGGCCGcGGCUGCUGc -5'
27670 3' -61.1 NC_005882.1 + 6249 0.66 0.35448
Target:  5'- cGCUucguCGcGCGUcaacgagcuuugACCGGCGUCGAcaCGGCGu -3'
miRNA:   3'- -UGAu---GC-CGCG------------UGGCCGCGGCU--GCUGC- -5'
27670 3' -61.1 NC_005882.1 + 6644 0.75 0.072406
Target:  5'- -gUGCGGCGCGCCGuGCGUCu-CGGCGu -3'
miRNA:   3'- ugAUGCCGCGUGGC-CGCGGcuGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 6696 0.68 0.251854
Target:  5'- cGC-ACGGCGCGCCGca--CGACGACu -3'
miRNA:   3'- -UGaUGCCGCGUGGCcgcgGCUGCUGc -5'
27670 3' -61.1 NC_005882.1 + 8245 0.66 0.338161
Target:  5'- --gGCGGCaaGCGCCGGUcgGCUGAucauCGACa -3'
miRNA:   3'- ugaUGCCG--CGUGGCCG--CGGCU----GCUGc -5'
27670 3' -61.1 NC_005882.1 + 9489 0.77 0.059361
Target:  5'- cGCUGCgauuGGCGCGCUGGCGgCCGcaagcACGACGc -3'
miRNA:   3'- -UGAUG----CCGCGUGGCCGC-GGC-----UGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 10105 0.68 0.239369
Target:  5'- --gGCGGCGC-UUGGUGCgGugGACu -3'
miRNA:   3'- ugaUGCCGCGuGGCCGCGgCugCUGc -5'
27670 3' -61.1 NC_005882.1 + 11985 0.76 0.066508
Target:  5'- gGCcACgGGCGCGgCGGCGCCGagcaacGCGACGa -3'
miRNA:   3'- -UGaUG-CCGCGUgGCCGCGGC------UGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 12026 0.68 0.245545
Target:  5'- aGCU-CGGCGCgguacGCCaGCGCCu-CGGCGg -3'
miRNA:   3'- -UGAuGCCGCG-----UGGcCGCGGcuGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 12127 0.7 0.170376
Target:  5'- cGCUgACGGCGU-CCGcGCGCCaGCGGCu -3'
miRNA:   3'- -UGA-UGCCGCGuGGC-CGCGGcUGCUGc -5'
27670 3' -61.1 NC_005882.1 + 12246 0.66 0.312445
Target:  5'- --cACGGCG-GCCGGUGCaugcgagcgcauggCGAUGACGc -3'
miRNA:   3'- ugaUGCCGCgUGGCCGCG--------------GCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 12328 0.71 0.153024
Target:  5'- cGCgugACGGCuGcCGgCGGCGCCGAuCGGCa -3'
miRNA:   3'- -UGa--UGCCG-C-GUgGCCGCGGCU-GCUGc -5'
27670 3' -61.1 NC_005882.1 + 12395 0.66 0.353651
Target:  5'- uGCcgauCGGCGcCGCCGGCaGCCGucacgcgcugaucGCGAUa -3'
miRNA:   3'- -UGau--GCCGC-GUGGCCG-CGGC-------------UGCUGc -5'
27670 3' -61.1 NC_005882.1 + 12454 0.66 0.35448
Target:  5'- --cGCGGaaaGCgGCCGcGUGCCGGcCGGCGu -3'
miRNA:   3'- ugaUGCCg--CG-UGGC-CGCGGCU-GCUGC- -5'
27670 3' -61.1 NC_005882.1 + 12560 0.77 0.057694
Target:  5'- gGCgauCGGCGCACUGGCGgCUGGCG-CGg -3'
miRNA:   3'- -UGau-GCCGCGUGGCCGC-GGCUGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.