miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27670 3' -61.1 NC_005882.1 + 12599 0.67 0.299788
Target:  5'- --cGCcGCaGCGCCGGcCGCCGccGCGACa -3'
miRNA:   3'- ugaUGcCG-CGUGGCC-GCGGC--UGCUGc -5'
27670 3' -61.1 NC_005882.1 + 12600 0.71 0.16588
Target:  5'- --gGCGGCuaucaCGCCGGUgcgcuuGCCGGCGACGc -3'
miRNA:   3'- ugaUGCCGc----GUGGCCG------CGGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 12723 0.68 0.238758
Target:  5'- cGCgcgGCGGCGCucGCCGGCgaccuguucGCCGAgaaagccCGGCa -3'
miRNA:   3'- -UGa--UGCCGCG--UGGCCG---------CGGCU-------GCUGc -5'
27670 3' -61.1 NC_005882.1 + 12887 0.72 0.119716
Target:  5'- cCUGaagaGGCGCAuCCGGCGCCG--GGCGg -3'
miRNA:   3'- uGAUg---CCGCGU-GGCCGCGGCugCUGC- -5'
27670 3' -61.1 NC_005882.1 + 12897 0.69 0.215952
Target:  5'- --aACGcCGcCGCCGGCGCCGAUGGu- -3'
miRNA:   3'- ugaUGCcGC-GUGGCCGCGGCUGCUgc -5'
27670 3' -61.1 NC_005882.1 + 12947 0.7 0.170376
Target:  5'- aGCUGuuGCGCcgGCCcGCGCCGAUGACc -3'
miRNA:   3'- -UGAUgcCGCG--UGGcCGCGGCUGCUGc -5'
27670 3' -61.1 NC_005882.1 + 12971 0.77 0.059361
Target:  5'- cACUggucGCGG-GCACaccauCGGCGCCGGCGGCGg -3'
miRNA:   3'- -UGA----UGCCgCGUG-----GCCGCGGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 13012 0.72 0.123055
Target:  5'- gGCgucauCGGCGCggGCCGGCGCaacagcucCGGCGGCa -3'
miRNA:   3'- -UGau---GCCGCG--UGGCCGCG--------GCUGCUGc -5'
27670 3' -61.1 NC_005882.1 + 13076 0.84 0.015727
Target:  5'- gGCUGCGGCG-GCUGGCGUCGACGugGu -3'
miRNA:   3'- -UGAUGCCGCgUGGCCGCGGCUGCugC- -5'
27670 3' -61.1 NC_005882.1 + 13515 0.69 0.1997
Target:  5'- --cGCGGCGCACCuuGGCGUgGuCGAUu -3'
miRNA:   3'- ugaUGCCGCGUGG--CCGCGgCuGCUGc -5'
27670 3' -61.1 NC_005882.1 + 14421 0.68 0.262883
Target:  5'- gACguguCGGCGCACCauuucugcugauacGGCaGCagGACGGCGg -3'
miRNA:   3'- -UGau--GCCGCGUGG--------------CCG-CGg-CUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 15469 0.66 0.351997
Target:  5'- cGCUACGGCGCAUCGcGCauccagcaagugauGCUGuccgaguCGugGu -3'
miRNA:   3'- -UGAUGCCGCGUGGC-CG--------------CGGCu------GCugC- -5'
27670 3' -61.1 NC_005882.1 + 16064 0.69 0.227405
Target:  5'- uGCgGCGGCGCACgCaccCGCCGACGuGCGc -3'
miRNA:   3'- -UGaUGCCGCGUG-Gcc-GCGGCUGC-UGC- -5'
27670 3' -61.1 NC_005882.1 + 16659 0.66 0.35448
Target:  5'- ---uCGGCGCuACCGGUcuuGCCGGCuGCu -3'
miRNA:   3'- ugauGCCGCG-UGGCCG---CGGCUGcUGc -5'
27670 3' -61.1 NC_005882.1 + 17146 0.67 0.307185
Target:  5'- --aACGGCGCGa--GUGCCGACGAg- -3'
miRNA:   3'- ugaUGCCGCGUggcCGCGGCUGCUgc -5'
27670 3' -61.1 NC_005882.1 + 17165 0.67 0.27158
Target:  5'- --aGCGGCGCgACCaGCGCCuGCG-CGu -3'
miRNA:   3'- ugaUGCCGCG-UGGcCGCGGcUGCuGC- -5'
27670 3' -61.1 NC_005882.1 + 17810 0.71 0.153024
Target:  5'- gGCUGgGGC-UGCCGGUGCCG-CGugGu -3'
miRNA:   3'- -UGAUgCCGcGUGGCCGCGGCuGCugC- -5'
27670 3' -61.1 NC_005882.1 + 18022 0.66 0.346251
Target:  5'- --cGCGGCGCgugACUGG-GUCGACGguGCGg -3'
miRNA:   3'- ugaUGCCGCG---UGGCCgCGGCUGC--UGC- -5'
27670 3' -61.1 NC_005882.1 + 18503 0.66 0.35448
Target:  5'- --cGCGGCGUAuuCCuuguuGCuGCCGAUGACGg -3'
miRNA:   3'- ugaUGCCGCGU--GGc----CG-CGGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 19048 0.67 0.27158
Target:  5'- cACgcCGGCGCguugucGCgCGGaugGCCGAUGACGa -3'
miRNA:   3'- -UGauGCCGCG------UG-GCCg--CGGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.