miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27670 3' -61.1 NC_005882.1 + 29994 0.68 0.26487
Target:  5'- cGCU-CGGCGCucgccguccagGCCGGCaaaGgCGGCGGCa -3'
miRNA:   3'- -UGAuGCCGCG-----------UGGCCG---CgGCUGCUGc -5'
27670 3' -61.1 NC_005882.1 + 26558 0.7 0.170376
Target:  5'- gACUACGuGCGCcgcgcggaGCUGGCGaCCGucGCGugGg -3'
miRNA:   3'- -UGAUGC-CGCG--------UGGCCGC-GGC--UGCugC- -5'
27670 3' -61.1 NC_005882.1 + 12947 0.7 0.170376
Target:  5'- aGCUGuuGCGCcgGCCcGCGCCGAUGACc -3'
miRNA:   3'- -UGAUgcCGCG--UGGcCGCGGCUGCUGc -5'
27670 3' -61.1 NC_005882.1 + 21166 0.7 0.174516
Target:  5'- uGCU-CGGCGUcauccuggucaugGCCGGCGCacCGGuCGACGa -3'
miRNA:   3'- -UGAuGCCGCG-------------UGGCCGCG--GCU-GCUGC- -5'
27670 3' -61.1 NC_005882.1 + 29654 0.7 0.184525
Target:  5'- uCUACGGCGUgACgGGUGacuCCGugGGCGu -3'
miRNA:   3'- uGAUGCCGCG-UGgCCGC---GGCugCUGC- -5'
27670 3' -61.1 NC_005882.1 + 12897 0.69 0.215952
Target:  5'- --aACGcCGcCGCCGGCGCCGAUGGu- -3'
miRNA:   3'- ugaUGCcGC-GUGGCCGCGGCUGCUgc -5'
27670 3' -61.1 NC_005882.1 + 22017 0.68 0.233322
Target:  5'- aGCUcaACGGcCGCGgCGGUGCCauCGACGu -3'
miRNA:   3'- -UGA--UGCC-GCGUgGCCGCGGcuGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 12723 0.68 0.238758
Target:  5'- cGCgcgGCGGCGCucGCCGGCgaccuguucGCCGAgaaagccCGGCa -3'
miRNA:   3'- -UGa--UGCCGCG--UGGCCG---------CGGCU-------GCUGc -5'
27670 3' -61.1 NC_005882.1 + 23222 0.68 0.26487
Target:  5'- cGCgcaGGCGCugGCCgGGCGCgGGcCGGCGg -3'
miRNA:   3'- -UGaugCCGCG--UGG-CCGCGgCU-GCUGC- -5'
27670 3' -61.1 NC_005882.1 + 12600 0.71 0.16588
Target:  5'- --gGCGGCuaucaCGCCGGUgcgcuuGCCGGCGACGc -3'
miRNA:   3'- ugaUGCCGc----GUGGCCG------CGGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 30064 0.71 0.16149
Target:  5'- uCUACGGCGuCACC-GCGaaaGGCGACGu -3'
miRNA:   3'- uGAUGCCGC-GUGGcCGCgg-CUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 23428 0.71 0.16149
Target:  5'- aGCUcguCGGCGuCACgGGCGUCGAgCGGCc -3'
miRNA:   3'- -UGAu--GCCGC-GUGgCCGCGGCU-GCUGc -5'
27670 3' -61.1 NC_005882.1 + 19806 0.82 0.021038
Target:  5'- --cGCGaGCGCGCCGGCGUgaCGACGACGg -3'
miRNA:   3'- ugaUGC-CGCGUGGCCGCG--GCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 12560 0.77 0.057694
Target:  5'- gGCgauCGGCGCACUGGCGgCUGGCG-CGg -3'
miRNA:   3'- -UGau-GCCGCGUGGCCGC-GGCUGCuGC- -5'
27670 3' -61.1 NC_005882.1 + 9489 0.77 0.059361
Target:  5'- cGCUGCgauuGGCGCGCUGGCGgCCGcaagcACGACGc -3'
miRNA:   3'- -UGAUG----CCGCGUGGCCGC-GGC-----UGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 21286 0.76 0.064647
Target:  5'- -aUGCGGCGa--CGGCgGCCGGCGACGu -3'
miRNA:   3'- ugAUGCCGCgugGCCG-CGGCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 6644 0.75 0.072406
Target:  5'- -gUGCGGCGCGCCGuGCGUCu-CGGCGu -3'
miRNA:   3'- ugAUGCCGCGUGGC-CGCGGcuGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 31392 0.73 0.107188
Target:  5'- gGCUGcCGGCGCAgCCcGCGaaGACGACGc -3'
miRNA:   3'- -UGAU-GCCGCGU-GGcCGCggCUGCUGC- -5'
27670 3' -61.1 NC_005882.1 + 12328 0.71 0.153024
Target:  5'- cGCgugACGGCuGcCGgCGGCGCCGAuCGGCa -3'
miRNA:   3'- -UGa--UGCCG-C-GUgGCCGCGGCU-GCUGc -5'
27670 3' -61.1 NC_005882.1 + 17810 0.71 0.153024
Target:  5'- gGCUGgGGC-UGCCGGUGCCG-CGugGu -3'
miRNA:   3'- -UGAUgCCGcGUGGCCGCGGCuGCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.