miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27670 5' -54.3 NC_005882.1 + 11914 0.66 0.64044
Target:  5'- --uGUCGUCGcguuGCUCGGcGcCGCCGc -3'
miRNA:   3'- cugUAGCAGCuuu-CGAGCCaC-GCGGU- -5'
27670 5' -54.3 NC_005882.1 + 28702 0.66 0.61755
Target:  5'- ----cCGUCGAGAGCUggcccgcggccCGGUcgauuGCGCCGg -3'
miRNA:   3'- cuguaGCAGCUUUCGA-----------GCCA-----CGCGGU- -5'
27670 5' -54.3 NC_005882.1 + 19186 0.66 0.61755
Target:  5'- ----aCGUCGGGuucCUCGGUGCGCa- -3'
miRNA:   3'- cuguaGCAGCUUuc-GAGCCACGCGgu -5'
27670 5' -54.3 NC_005882.1 + 25118 0.67 0.60612
Target:  5'- -cCAUCGUguggcuuugCGGccGGCUCGG-GCGCCGg -3'
miRNA:   3'- cuGUAGCA---------GCUu-UCGAGCCaCGCGGU- -5'
27670 5' -54.3 NC_005882.1 + 9702 0.67 0.594715
Target:  5'- aACAUCGcUGAucGCUCGGUGaauauccggGCCGg -3'
miRNA:   3'- cUGUAGCaGCUuuCGAGCCACg--------CGGU- -5'
27670 5' -54.3 NC_005882.1 + 32139 0.67 0.583343
Target:  5'- cGAUAUCGUCccgcgccAGCUCaGUcGCGCCGu -3'
miRNA:   3'- -CUGUAGCAGcuu----UCGAGcCA-CGCGGU- -5'
27670 5' -54.3 NC_005882.1 + 11375 0.67 0.549529
Target:  5'- uGCAUCGUCG-GAGUUCuccuGGU-CGCCAg -3'
miRNA:   3'- cUGUAGCAGCuUUCGAG----CCAcGCGGU- -5'
27670 5' -54.3 NC_005882.1 + 6919 0.68 0.538388
Target:  5'- cGAUAUCGUCGAGcuucAGCUCGccgGUuugGCCGg -3'
miRNA:   3'- -CUGUAGCAGCUU----UCGAGCca-CG---CGGU- -5'
27670 5' -54.3 NC_005882.1 + 21756 0.68 0.494678
Target:  5'- gGGCGUCGcCGGGccGCUCGG-GuCGCCGa -3'
miRNA:   3'- -CUGUAGCaGCUUu-CGAGCCaC-GCGGU- -5'
27670 5' -54.3 NC_005882.1 + 21252 0.7 0.39349
Target:  5'- cGGCAugcUCGUCGA---C-CGGUGCGCCGg -3'
miRNA:   3'- -CUGU---AGCAGCUuucGaGCCACGCGGU- -5'
27670 5' -54.3 NC_005882.1 + 686 0.7 0.391606
Target:  5'- cGACAUCGgcgccgaccaggCGAAccAGCUCGG-GCGCgAg -3'
miRNA:   3'- -CUGUAGCa-----------GCUU--UCGAGCCaCGCGgU- -5'
27670 5' -54.3 NC_005882.1 + 34572 0.73 0.28371
Target:  5'- aGAuCGUUGUCGAGAcggcGCUCGGcgGUGCCGc -3'
miRNA:   3'- -CU-GUAGCAGCUUU----CGAGCCa-CGCGGU- -5'
27670 5' -54.3 NC_005882.1 + 32595 0.74 0.229055
Target:  5'- aGC-UUGUCGAGGGCaUCGGUGgCGCCu -3'
miRNA:   3'- cUGuAGCAGCUUUCG-AGCCAC-GCGGu -5'
27670 5' -54.3 NC_005882.1 + 21483 0.76 0.168676
Target:  5'- --gAUCGUCGucGGCgcCGGUGCGCCGu -3'
miRNA:   3'- cugUAGCAGCuuUCGa-GCCACGCGGU- -5'
27670 5' -54.3 NC_005882.1 + 21453 1.09 0.000704
Target:  5'- cGACAUCGUCGAAAGCUCGGUGCGCCAg -3'
miRNA:   3'- -CUGUAGCAGCUUUCGAGCCACGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.