Results 1 - 15 of 15 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27670 | 5' | -54.3 | NC_005882.1 | + | 21453 | 1.09 | 0.000704 |
Target: 5'- cGACAUCGUCGAAAGCUCGGUGCGCCAg -3' miRNA: 3'- -CUGUAGCAGCUUUCGAGCCACGCGGU- -5' |
|||||||
27670 | 5' | -54.3 | NC_005882.1 | + | 11914 | 0.66 | 0.64044 |
Target: 5'- --uGUCGUCGcguuGCUCGGcGcCGCCGc -3' miRNA: 3'- cugUAGCAGCuuu-CGAGCCaC-GCGGU- -5' |
|||||||
27670 | 5' | -54.3 | NC_005882.1 | + | 19186 | 0.66 | 0.61755 |
Target: 5'- ----aCGUCGGGuucCUCGGUGCGCa- -3' miRNA: 3'- cuguaGCAGCUUuc-GAGCCACGCGgu -5' |
|||||||
27670 | 5' | -54.3 | NC_005882.1 | + | 9702 | 0.67 | 0.594715 |
Target: 5'- aACAUCGcUGAucGCUCGGUGaauauccggGCCGg -3' miRNA: 3'- cUGUAGCaGCUuuCGAGCCACg--------CGGU- -5' |
|||||||
27670 | 5' | -54.3 | NC_005882.1 | + | 32139 | 0.67 | 0.583343 |
Target: 5'- cGAUAUCGUCccgcgccAGCUCaGUcGCGCCGu -3' miRNA: 3'- -CUGUAGCAGcuu----UCGAGcCA-CGCGGU- -5' |
|||||||
27670 | 5' | -54.3 | NC_005882.1 | + | 6919 | 0.68 | 0.538388 |
Target: 5'- cGAUAUCGUCGAGcuucAGCUCGccgGUuugGCCGg -3' miRNA: 3'- -CUGUAGCAGCUU----UCGAGCca-CG---CGGU- -5' |
|||||||
27670 | 5' | -54.3 | NC_005882.1 | + | 34572 | 0.73 | 0.28371 |
Target: 5'- aGAuCGUUGUCGAGAcggcGCUCGGcgGUGCCGc -3' miRNA: 3'- -CU-GUAGCAGCUUU----CGAGCCa-CGCGGU- -5' |
|||||||
27670 | 5' | -54.3 | NC_005882.1 | + | 32595 | 0.74 | 0.229055 |
Target: 5'- aGC-UUGUCGAGGGCaUCGGUGgCGCCu -3' miRNA: 3'- cUGuAGCAGCUUUCG-AGCCAC-GCGGu -5' |
|||||||
27670 | 5' | -54.3 | NC_005882.1 | + | 25118 | 0.67 | 0.60612 |
Target: 5'- -cCAUCGUguggcuuugCGGccGGCUCGG-GCGCCGg -3' miRNA: 3'- cuGUAGCA---------GCUu-UCGAGCCaCGCGGU- -5' |
|||||||
27670 | 5' | -54.3 | NC_005882.1 | + | 11375 | 0.67 | 0.549529 |
Target: 5'- uGCAUCGUCG-GAGUUCuccuGGU-CGCCAg -3' miRNA: 3'- cUGUAGCAGCuUUCGAG----CCAcGCGGU- -5' |
|||||||
27670 | 5' | -54.3 | NC_005882.1 | + | 21756 | 0.68 | 0.494678 |
Target: 5'- gGGCGUCGcCGGGccGCUCGG-GuCGCCGa -3' miRNA: 3'- -CUGUAGCaGCUUu-CGAGCCaC-GCGGU- -5' |
|||||||
27670 | 5' | -54.3 | NC_005882.1 | + | 21252 | 0.7 | 0.39349 |
Target: 5'- cGGCAugcUCGUCGA---C-CGGUGCGCCGg -3' miRNA: 3'- -CUGU---AGCAGCUuucGaGCCACGCGGU- -5' |
|||||||
27670 | 5' | -54.3 | NC_005882.1 | + | 686 | 0.7 | 0.391606 |
Target: 5'- cGACAUCGgcgccgaccaggCGAAccAGCUCGG-GCGCgAg -3' miRNA: 3'- -CUGUAGCa-----------GCUU--UCGAGCCaCGCGgU- -5' |
|||||||
27670 | 5' | -54.3 | NC_005882.1 | + | 21483 | 0.76 | 0.168676 |
Target: 5'- --gAUCGUCGucGGCgcCGGUGCGCCGu -3' miRNA: 3'- cugUAGCAGCuuUCGa-GCCACGCGGU- -5' |
|||||||
27670 | 5' | -54.3 | NC_005882.1 | + | 28702 | 0.66 | 0.61755 |
Target: 5'- ----cCGUCGAGAGCUggcccgcggccCGGUcgauuGCGCCGg -3' miRNA: 3'- cuguaGCAGCUUUCGA-----------GCCA-----CGCGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home