miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27671 5' -62.2 NC_005882.1 + 10849 0.66 0.291312
Target:  5'- aAGCaccCCGUAGacCGCCGUCGACCcgAAGa -3'
miRNA:   3'- -UCGgccGGCGUC--GCGGCAGCUGG--UUC- -5'
27671 5' -62.2 NC_005882.1 + 32019 0.66 0.291312
Target:  5'- cAG-CGGCCGCcGaCGCuCGUCGGUCAGGu -3'
miRNA:   3'- -UCgGCCGGCGuC-GCG-GCAGCUGGUUC- -5'
27671 5' -62.2 NC_005882.1 + 22706 0.66 0.291312
Target:  5'- uGCgGGCCGaacuGCGCCGcgUCGACg--- -3'
miRNA:   3'- uCGgCCGGCgu--CGCGGC--AGCUGguuc -5'
27671 5' -62.2 NC_005882.1 + 28641 0.66 0.291312
Target:  5'- cGCCaaGCCGCcuuGCGCCGaUCgGACCGc- -3'
miRNA:   3'- uCGGc-CGGCGu--CGCGGC-AG-CUGGUuc -5'
27671 5' -62.2 NC_005882.1 + 2260 0.66 0.284186
Target:  5'- cGCUGGauGCGGUagcgGCCGUCGAaCGAGu -3'
miRNA:   3'- uCGGCCggCGUCG----CGGCAGCUgGUUC- -5'
27671 5' -62.2 NC_005882.1 + 27660 0.66 0.284186
Target:  5'- cGCCgcGGCCGCGGCcugCGUCG-CCAu- -3'
miRNA:   3'- uCGG--CCGGCGUCGcg-GCAGCuGGUuc -5'
27671 5' -62.2 NC_005882.1 + 1942 0.66 0.284186
Target:  5'- cGCUGGCCGCgAGCGUC-UCGcgguauccACCAu- -3'
miRNA:   3'- uCGGCCGGCG-UCGCGGcAGC--------UGGUuc -5'
27671 5' -62.2 NC_005882.1 + 1303 0.66 0.282777
Target:  5'- cGCCGGCCGCAucgagggguuccCGCCGguagaugGAUCGAGc -3'
miRNA:   3'- uCGGCCGGCGUc-----------GCGGCag-----CUGGUUC- -5'
27671 5' -62.2 NC_005882.1 + 13782 0.66 0.277199
Target:  5'- uGGCCGGCCGC-GCGaugcCCGgcucgcaaUCGAUCGu- -3'
miRNA:   3'- -UCGGCCGGCGuCGC----GGC--------AGCUGGUuc -5'
27671 5' -62.2 NC_005882.1 + 15816 0.66 0.277199
Target:  5'- cGCUGGa-GCGGCGCCGccgCGACUu-- -3'
miRNA:   3'- uCGGCCggCGUCGCGGCa--GCUGGuuc -5'
27671 5' -62.2 NC_005882.1 + 3693 0.66 0.273072
Target:  5'- aAGCCGGUcggcgacgugaucgaCGCaAGCGgCGUCGACg--- -3'
miRNA:   3'- -UCGGCCG---------------GCG-UCGCgGCAGCUGguuc -5'
27671 5' -62.2 NC_005882.1 + 25057 0.66 0.269671
Target:  5'- gAGCCGGCCGCaaagccacacgauGGCcuugaucgccGCCG-CGAUgAGGu -3'
miRNA:   3'- -UCGGCCGGCG-------------UCG----------CGGCaGCUGgUUC- -5'
27671 5' -62.2 NC_005882.1 + 16771 0.66 0.263637
Target:  5'- aAGcCCGGCCuGCGcggacGCGCgCGUCGACg--- -3'
miRNA:   3'- -UC-GGCCGG-CGU-----CGCG-GCAGCUGguuc -5'
27671 5' -62.2 NC_005882.1 + 8754 0.66 0.263637
Target:  5'- cAGuuGGCgacgaGCAGCGCCGaaaCGACgCAGc -3'
miRNA:   3'- -UCggCCGg----CGUCGCGGCa--GCUG-GUUc -5'
27671 5' -62.2 NC_005882.1 + 7752 0.66 0.263637
Target:  5'- cGCCGcCCGCgAGCGCC-UCGACa--- -3'
miRNA:   3'- uCGGCcGGCG-UCGCGGcAGCUGguuc -5'
27671 5' -62.2 NC_005882.1 + 34481 0.66 0.263636
Target:  5'- cAGCgGGCCGuCGGCucgGUCGUCgGAUCGAu -3'
miRNA:   3'- -UCGgCCGGC-GUCG---CGGCAG-CUGGUUc -5'
27671 5' -62.2 NC_005882.1 + 13722 0.66 0.263636
Target:  5'- gAGCCGG--GCAucGCGCgGcCGGCCAAGu -3'
miRNA:   3'- -UCGGCCggCGU--CGCGgCaGCUGGUUC- -5'
27671 5' -62.2 NC_005882.1 + 16028 0.66 0.263636
Target:  5'- aAGgCGGCCGUgaaAGCGCuCGaauggggccUCGACCGu- -3'
miRNA:   3'- -UCgGCCGGCG---UCGCG-GC---------AGCUGGUuc -5'
27671 5' -62.2 NC_005882.1 + 21554 0.66 0.25706
Target:  5'- uAG-CGGCCGCgcaAGUGCgCGUCGACgAu- -3'
miRNA:   3'- -UCgGCCGGCG---UCGCG-GCAGCUGgUuc -5'
27671 5' -62.2 NC_005882.1 + 26895 0.66 0.25706
Target:  5'- gGGCCGGUgGCGGCucccGCCuGUCcACCGu- -3'
miRNA:   3'- -UCGGCCGgCGUCG----CGG-CAGcUGGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.