miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27671 5' -62.2 NC_005882.1 + 22396 1.07 0.000176
Target:  5'- aAGCCGGCCGCAGCGCCGUCGACCAAGc -3'
miRNA:   3'- -UCGGCCGGCGUCGCGGCAGCUGGUUC- -5'
27671 5' -62.2 NC_005882.1 + 26837 0.81 0.018418
Target:  5'- cAGCCGGCCGCgAGCGUCG-CGACCu-- -3'
miRNA:   3'- -UCGGCCGGCG-UCGCGGCaGCUGGuuc -5'
27671 5' -62.2 NC_005882.1 + 25575 0.77 0.039111
Target:  5'- cGGCUGGCgCGCGGCGCCG-CGcugcgugagcaacGCCAGGg -3'
miRNA:   3'- -UCGGCCG-GCGUCGCGGCaGC-------------UGGUUC- -5'
27671 5' -62.2 NC_005882.1 + 29869 0.77 0.041556
Target:  5'- aAGCUGGCCGcCGGUG-CGUCGAUCGAGc -3'
miRNA:   3'- -UCGGCCGGC-GUCGCgGCAGCUGGUUC- -5'
27671 5' -62.2 NC_005882.1 + 26142 0.77 0.045311
Target:  5'- aAGUCGGCCGCgaaGGCGCCGgcaguggCGACgAAGc -3'
miRNA:   3'- -UCGGCCGGCG---UCGCGGCa------GCUGgUUC- -5'
27671 5' -62.2 NC_005882.1 + 21277 0.76 0.052921
Target:  5'- uGGCCGGCCGCguccgacucgaccucGGCauGCuCGUCGACCGGu -3'
miRNA:   3'- -UCGGCCGGCG---------------UCG--CG-GCAGCUGGUUc -5'
27671 5' -62.2 NC_005882.1 + 25706 0.75 0.061944
Target:  5'- gGGCgCGGCCGUGGCagccGCCGUCGcguauguGCCGAGc -3'
miRNA:   3'- -UCG-GCCGGCGUCG----CGGCAGC-------UGGUUC- -5'
27671 5' -62.2 NC_005882.1 + 12266 0.75 0.062121
Target:  5'- uGCCGGUCGUaccgcacgAGCGCaCGaaUCGACCAGGa -3'
miRNA:   3'- uCGGCCGGCG--------UCGCG-GC--AGCUGGUUC- -5'
27671 5' -62.2 NC_005882.1 + 21721 0.75 0.063737
Target:  5'- gAGCCGGgcgaaaugaagguCCGCGcGCGCCGUCG-CCAGu -3'
miRNA:   3'- -UCGGCC-------------GGCGU-CGCGGCAGCuGGUUc -5'
27671 5' -62.2 NC_005882.1 + 28244 0.73 0.077987
Target:  5'- cGCCGGCCGUacagcccaaGGUGCCGccggCGGCCGc- -3'
miRNA:   3'- uCGGCCGGCG---------UCGCGGCa---GCUGGUuc -5'
27671 5' -62.2 NC_005882.1 + 3270 0.73 0.077987
Target:  5'- cGGCCGGCCGCcgucGCGCgGcgagaucucuUCGGCCAGc -3'
miRNA:   3'- -UCGGCCGGCGu---CGCGgC----------AGCUGGUUc -5'
27671 5' -62.2 NC_005882.1 + 6400 0.73 0.084885
Target:  5'- uGGCCGGCCGCGcGCGCUGccugggCGACa--- -3'
miRNA:   3'- -UCGGCCGGCGU-CGCGGCa-----GCUGguuc -5'
27671 5' -62.2 NC_005882.1 + 12606 0.72 0.092362
Target:  5'- cGCCGaucGCCGCAGCGCCGgCcGCCGc- -3'
miRNA:   3'- uCGGC---CGGCGUCGCGGCaGcUGGUuc -5'
27671 5' -62.2 NC_005882.1 + 29812 0.72 0.097416
Target:  5'- gAGCCGGCCcgugcggaaagccGCAGCGUgucgccgcuCGUCGACUGAc -3'
miRNA:   3'- -UCGGCCGG-------------CGUCGCG---------GCAGCUGGUUc -5'
27671 5' -62.2 NC_005882.1 + 14209 0.72 0.103305
Target:  5'- aAG-CGGCCGCcGCgGCCGUCGA-CAAGg -3'
miRNA:   3'- -UCgGCCGGCGuCG-CGGCAGCUgGUUC- -5'
27671 5' -62.2 NC_005882.1 + 694 0.72 0.109225
Target:  5'- gAGCUGGCCGaCAuCGgCGcCGACCAGGc -3'
miRNA:   3'- -UCGGCCGGC-GUcGCgGCaGCUGGUUC- -5'
27671 5' -62.2 NC_005882.1 + 25422 0.72 0.109225
Target:  5'- uGCCGGaaagCGCGGCGCCGaagCuACCGAGu -3'
miRNA:   3'- uCGGCCg---GCGUCGCGGCa--GcUGGUUC- -5'
27671 5' -62.2 NC_005882.1 + 26064 0.71 0.112303
Target:  5'- uGCCGGaaaugaCCGCGGCGUUugCGGCCAAGg -3'
miRNA:   3'- uCGGCC------GGCGUCGCGGcaGCUGGUUC- -5'
27671 5' -62.2 NC_005882.1 + 21342 0.71 0.118703
Target:  5'- cGCCGGCCGCcGuCGCCGcaUCGAgCGc- -3'
miRNA:   3'- uCGGCCGGCGuC-GCGGC--AGCUgGUuc -5'
27671 5' -62.2 NC_005882.1 + 17530 0.71 0.122029
Target:  5'- gGGCUGGUggggaaaGCAGgaGCaCGUCGACCAGGa -3'
miRNA:   3'- -UCGGCCGg------CGUCg-CG-GCAGCUGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.