miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27671 5' -62.2 NC_005882.1 + 620 0.69 0.156076
Target:  5'- gAGCUGGuUCGCcuggucGGCGCCGaugUCGGCCAGc -3'
miRNA:   3'- -UCGGCC-GGCG------UCGCGGC---AGCUGGUUc -5'
27671 5' -62.2 NC_005882.1 + 694 0.72 0.109225
Target:  5'- gAGCUGGCCGaCAuCGgCGcCGACCAGGc -3'
miRNA:   3'- -UCGGCCGGC-GUcGCgGCaGCUGGUUC- -5'
27671 5' -62.2 NC_005882.1 + 1303 0.66 0.282777
Target:  5'- cGCCGGCCGCAucgagggguuccCGCCGguagaugGAUCGAGc -3'
miRNA:   3'- uCGGCCGGCGUc-----------GCGGCag-----CUGGUUC- -5'
27671 5' -62.2 NC_005882.1 + 1942 0.66 0.284186
Target:  5'- cGCUGGCCGCgAGCGUC-UCGcgguauccACCAu- -3'
miRNA:   3'- uCGGCCGGCG-UCGCGGcAGC--------UGGUuc -5'
27671 5' -62.2 NC_005882.1 + 2260 0.66 0.284186
Target:  5'- cGCUGGauGCGGUagcgGCCGUCGAaCGAGu -3'
miRNA:   3'- uCGGCCggCGUCG----CGGCAGCUgGUUC- -5'
27671 5' -62.2 NC_005882.1 + 3270 0.73 0.077987
Target:  5'- cGGCCGGCCGCcgucGCGCgGcgagaucucuUCGGCCAGc -3'
miRNA:   3'- -UCGGCCGGCGu---CGCGgC----------AGCUGGUUc -5'
27671 5' -62.2 NC_005882.1 + 3527 0.69 0.16473
Target:  5'- uGCCGGUCGuCAcCGCCGacgUGAUCAAGg -3'
miRNA:   3'- uCGGCCGGC-GUcGCGGCa--GCUGGUUC- -5'
27671 5' -62.2 NC_005882.1 + 3601 0.68 0.191797
Target:  5'- gAGCCGaGUgCGCAGCGCgucgacgccgcuugCGUCGAUCAc- -3'
miRNA:   3'- -UCGGC-CG-GCGUCGCG--------------GCAGCUGGUuc -5'
27671 5' -62.2 NC_005882.1 + 3693 0.66 0.273072
Target:  5'- aAGCCGGUcggcgacgugaucgaCGCaAGCGgCGUCGACg--- -3'
miRNA:   3'- -UCGGCCG---------------GCG-UCGCgGCAGCUGguuc -5'
27671 5' -62.2 NC_005882.1 + 6400 0.73 0.084885
Target:  5'- uGGCCGGCCGCGcGCGCUGccugggCGACa--- -3'
miRNA:   3'- -UCGGCCGGCGU-CGCGGCa-----GCUGguuc -5'
27671 5' -62.2 NC_005882.1 + 7752 0.66 0.263637
Target:  5'- cGCCGcCCGCgAGCGCC-UCGACa--- -3'
miRNA:   3'- uCGGCcGGCG-UCGCGGcAGCUGguuc -5'
27671 5' -62.2 NC_005882.1 + 8149 0.68 0.203783
Target:  5'- -uUCGGCCGUcGCGUCG-CGGCCGGu -3'
miRNA:   3'- ucGGCCGGCGuCGCGGCaGCUGGUUc -5'
27671 5' -62.2 NC_005882.1 + 8250 0.68 0.188274
Target:  5'- uGGgUGGCgGCaAGCGCCGgUCGGCUGAu -3'
miRNA:   3'- -UCgGCCGgCG-UCGCGGC-AGCUGGUUc -5'
27671 5' -62.2 NC_005882.1 + 8754 0.66 0.263637
Target:  5'- cAGuuGGCgacgaGCAGCGCCGaaaCGACgCAGc -3'
miRNA:   3'- -UCggCCGg----CGUCGCGGCa--GCUG-GUUc -5'
27671 5' -62.2 NC_005882.1 + 10458 0.7 0.139993
Target:  5'- cGGCCGGCuCGuCAGUGCuugCGUCGugCGc- -3'
miRNA:   3'- -UCGGCCG-GC-GUCGCG---GCAGCugGUuc -5'
27671 5' -62.2 NC_005882.1 + 10661 0.7 0.132533
Target:  5'- gAGgCGGCgGCAGCG-UGUUGACCAc- -3'
miRNA:   3'- -UCgGCCGgCGUCGCgGCAGCUGGUuc -5'
27671 5' -62.2 NC_005882.1 + 10728 0.67 0.226175
Target:  5'- cGCCGGCgCGCGuucuucgauCGCC-UCGACCAGa -3'
miRNA:   3'- uCGGCCG-GCGUc--------GCGGcAGCUGGUUc -5'
27671 5' -62.2 NC_005882.1 + 10849 0.66 0.291312
Target:  5'- aAGCaccCCGUAGacCGCCGUCGACCcgAAGa -3'
miRNA:   3'- -UCGgccGGCGUC--GCGGCAGCUGG--UUC- -5'
27671 5' -62.2 NC_005882.1 + 12067 0.68 0.193325
Target:  5'- cGCUGGCgCGCGGaCGCCGUCaGCg--- -3'
miRNA:   3'- uCGGCCG-GCGUC-GCGGCAGcUGguuc -5'
27671 5' -62.2 NC_005882.1 + 12204 0.67 0.226175
Target:  5'- cAGCuCGGCCGgauaGGCGCCcgcgauccaGUCGACgguCGAGg -3'
miRNA:   3'- -UCG-GCCGGCg---UCGCGG---------CAGCUG---GUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.