miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27672 3' -57.8 NC_005882.1 + 23229 0.66 0.473014
Target:  5'- gCGCUG-GCCGGgcgCGGGCCGG-CGGg- -3'
miRNA:   3'- -GUGGCgUGGCUa--GCCCGGCCaGUUau -5'
27672 3' -57.8 NC_005882.1 + 20493 0.66 0.46281
Target:  5'- -uCCGCACgaaGAUCGGccGCCGGcCGAa- -3'
miRNA:   3'- guGGCGUGg--CUAGCC--CGGCCaGUUau -5'
27672 3' -57.8 NC_005882.1 + 7417 0.66 0.452722
Target:  5'- gACCGaCGCCGAUguucCGGGCaugcccgcaaUGGUCGAc- -3'
miRNA:   3'- gUGGC-GUGGCUA----GCCCG----------GCCAGUUau -5'
27672 3' -57.8 NC_005882.1 + 14764 0.66 0.423202
Target:  5'- gGCCGCgauggcgcuGCUGAUgUGGGgCGGUCAGg- -3'
miRNA:   3'- gUGGCG---------UGGCUA-GCCCgGCCAGUUau -5'
27672 3' -57.8 NC_005882.1 + 1299 0.67 0.404175
Target:  5'- gGCCGCAUCGAggGGuucccGCCGGUaGAUGg -3'
miRNA:   3'- gUGGCGUGGCUagCC-----CGGCCAgUUAU- -5'
27672 3' -57.8 NC_005882.1 + 8152 0.67 0.394865
Target:  5'- gGCCGuCGC--GUCGcGGCCGGUCGGg- -3'
miRNA:   3'- gUGGC-GUGgcUAGC-CCGGCCAGUUau -5'
27672 3' -57.8 NC_005882.1 + 33107 0.67 0.385697
Target:  5'- gUACUGCgaauGCgGGUCGGGCgCGG-CGAUAu -3'
miRNA:   3'- -GUGGCG----UGgCUAGCCCG-GCCaGUUAU- -5'
27672 3' -57.8 NC_005882.1 + 35018 0.67 0.367786
Target:  5'- cCGCCGCAUCGAUCauaGGGagCGcuGUCAGUGg -3'
miRNA:   3'- -GUGGCGUGGCUAG---CCCg-GC--CAGUUAU- -5'
27672 3' -57.8 NC_005882.1 + 21751 0.67 0.367786
Target:  5'- uCGCCGgGCCGcUCGGGUCGccgaucGUCAGc- -3'
miRNA:   3'- -GUGGCgUGGCuAGCCCGGC------CAGUUau -5'
27672 3' -57.8 NC_005882.1 + 8231 0.68 0.359047
Target:  5'- gCACCGCACgCGuccUCGaacGGCCGGaUCAGa- -3'
miRNA:   3'- -GUGGCGUG-GCu--AGC---CCGGCC-AGUUau -5'
27672 3' -57.8 NC_005882.1 + 18338 0.68 0.350454
Target:  5'- gACCGCgGCCGcGUCGcgucgcaaGGCCGGUCuGAUGa -3'
miRNA:   3'- gUGGCG-UGGC-UAGC--------CCGGCCAG-UUAU- -5'
27672 3' -57.8 NC_005882.1 + 6936 0.68 0.325563
Target:  5'- aGCU-CGCCGGUUuGGCCGGUCAGc- -3'
miRNA:   3'- gUGGcGUGGCUAGcCCGGCCAGUUau -5'
27672 3' -57.8 NC_005882.1 + 30675 0.68 0.323147
Target:  5'- uCGCCGC-CCGAUCcGGCCaugccgcccugguaGGUCAGc- -3'
miRNA:   3'- -GUGGCGuGGCUAGcCCGG--------------CCAGUUau -5'
27672 3' -57.8 NC_005882.1 + 12343 0.69 0.287049
Target:  5'- gGCgGCGCCGAUCGGcaacGCUGGUUc--- -3'
miRNA:   3'- gUGgCGUGGCUAGCC----CGGCCAGuuau -5'
27672 3' -57.8 NC_005882.1 + 12458 0.69 0.27979
Target:  5'- aGCCGCguuacgucaagGCCGGguUCGGGCCGGgagCGu-- -3'
miRNA:   3'- gUGGCG-----------UGGCU--AGCCCGGCCa--GUuau -5'
27672 3' -57.8 NC_005882.1 + 22595 1.06 0.000554
Target:  5'- gCACCGCACCGAUCGGGCCGGUCAAUAc -3'
miRNA:   3'- -GUGGCGUGGCUAGCCCGGCCAGUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.