miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27672 5' -59 NC_005882.1 + 12732 0.66 0.448358
Target:  5'- -gCGCuUGUUCGACGgcauCGCGcGCGCc -3'
miRNA:   3'- caGCG-ACAGGCUGCagcuGCGC-CGCG- -5'
27672 5' -59 NC_005882.1 + 16695 0.66 0.448358
Target:  5'- -cCGagg--CGACGUCGACGCGcGCGUc -3'
miRNA:   3'- caGCgacagGCUGCAGCUGCGC-CGCG- -5'
27672 5' -59 NC_005882.1 + 25067 0.66 0.438689
Target:  5'- aUUGCuuUGUC--GCGUCGACGCGcCGCu -3'
miRNA:   3'- cAGCG--ACAGgcUGCAGCUGCGCcGCG- -5'
27672 5' -59 NC_005882.1 + 4941 0.66 0.438689
Target:  5'- cUCGUUGcgCCGcGCGUCGAacuCGCGcCGCu -3'
miRNA:   3'- cAGCGACa-GGC-UGCAGCU---GCGCcGCG- -5'
27672 5' -59 NC_005882.1 + 19035 0.66 0.438689
Target:  5'- uGUCGCgcgGauggCCGAUGaCGAU-CGGCGCu -3'
miRNA:   3'- -CAGCGa--Ca---GGCUGCaGCUGcGCCGCG- -5'
27672 5' -59 NC_005882.1 + 27561 0.66 0.42914
Target:  5'- -gCGCUcgUCGGCgGUCGcCGCGcGCGCg -3'
miRNA:   3'- caGCGAcaGGCUG-CAGCuGCGC-CGCG- -5'
27672 5' -59 NC_005882.1 + 4879 0.66 0.42914
Target:  5'- -gCGCgaGUUCGAC----GCGCGGCGCa -3'
miRNA:   3'- caGCGa-CAGGCUGcagcUGCGCCGCG- -5'
27672 5' -59 NC_005882.1 + 4906 0.66 0.42914
Target:  5'- gGUCGUguUCCGugcCG-CGGCGCGGCa- -3'
miRNA:   3'- -CAGCGacAGGCu--GCaGCUGCGCCGcg -5'
27672 5' -59 NC_005882.1 + 22135 0.66 0.427245
Target:  5'- uUUGCaGUCCGGCGggCGGaagcccaccaggGCGGUGCg -3'
miRNA:   3'- cAGCGaCAGGCUGCa-GCUg-----------CGCCGCG- -5'
27672 5' -59 NC_005882.1 + 12025 0.66 0.419714
Target:  5'- -gCGCcaGUCU--CGUCGuuCGCGGCGCa -3'
miRNA:   3'- caGCGa-CAGGcuGCAGCu-GCGCCGCG- -5'
27672 5' -59 NC_005882.1 + 18427 0.66 0.413191
Target:  5'- -cCGCUGUCCugcaggaucaucaGACcggccuugcgacgCGACGCGGcCGCg -3'
miRNA:   3'- caGCGACAGG-------------CUGca-----------GCUGCGCC-GCG- -5'
27672 5' -59 NC_005882.1 + 3267 0.66 0.410415
Target:  5'- cGUCgGCcGgCCGcCGUCG-CGCGGCGa -3'
miRNA:   3'- -CAG-CGaCaGGCuGCAGCuGCGCCGCg -5'
27672 5' -59 NC_005882.1 + 28360 0.66 0.406731
Target:  5'- -gCGCaGUCCGcgaugcgcguggcCGUCGACGCGGUc- -3'
miRNA:   3'- caGCGaCAGGCu------------GCAGCUGCGCCGcg -5'
27672 5' -59 NC_005882.1 + 19287 0.67 0.401245
Target:  5'- cGUCGCUGaaaUUGACGUCG-CGCaGGCc- -3'
miRNA:   3'- -CAGCGACa--GGCUGCAGCuGCG-CCGcg -5'
27672 5' -59 NC_005882.1 + 12967 0.67 0.401245
Target:  5'- gGUCGCgGgcacaccaUCGGCGcCGGCgGCGGCGUu -3'
miRNA:   3'- -CAGCGaCa-------GGCUGCaGCUG-CGCCGCG- -5'
27672 5' -59 NC_005882.1 + 31054 0.67 0.393105
Target:  5'- aUCGCgucGaCCGACucgcgcacaacaugCGGCGUGGCGCg -3'
miRNA:   3'- cAGCGa--CaGGCUGca------------GCUGCGCCGCG- -5'
27672 5' -59 NC_005882.1 + 21493 0.67 0.392207
Target:  5'- uGUCGguaUUGaUCGuCGUCGGCGCcGGUGCg -3'
miRNA:   3'- -CAGC---GACaGGCuGCAGCUGCG-CCGCG- -5'
27672 5' -59 NC_005882.1 + 8789 0.67 0.392207
Target:  5'- cUCGCcgaUGaCCGGgcUGUCGACGUGGUGg -3'
miRNA:   3'- cAGCG---ACaGGCU--GCAGCUGCGCCGCg -5'
27672 5' -59 NC_005882.1 + 7690 0.67 0.392207
Target:  5'- -aUGCUGUCgaGGCGcUCGcGgGCGGCGUc -3'
miRNA:   3'- caGCGACAGg-CUGC-AGC-UgCGCCGCG- -5'
27672 5' -59 NC_005882.1 + 32066 0.67 0.383302
Target:  5'- aUCGCguaGUcgaCCGGCGUCGGCGauCGGaCGUc -3'
miRNA:   3'- cAGCGa--CA---GGCUGCAGCUGC--GCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.