Results 1 - 20 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27672 | 5' | -59 | NC_005882.1 | + | 22631 | 1.12 | 0.000199 |
Target: 5'- aGUCGCUGUCCGACGUCGACGCGGCGCa -3' miRNA: 3'- -CAGCGACAGGCUGCAGCUGCGCCGCG- -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 6254 | 0.75 | 0.112128 |
Target: 5'- cGUCGCgcgucaacgagcuuUGaCCGGCGUCGACaCGGCGUu -3' miRNA: 3'- -CAGCG--------------ACaGGCUGCAGCUGcGCCGCG- -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 13082 | 0.74 | 0.135775 |
Target: 5'- uGUCGCggcugcggcggCUGGCGUCGACGUGGUGg -3' miRNA: 3'- -CAGCGaca--------GGCUGCAGCUGCGCCGCg -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 17186 | 0.72 | 0.195147 |
Target: 5'- --aGCUGuaUCCGAgCcUCGACGCGGaCGCg -3' miRNA: 3'- cagCGAC--AGGCU-GcAGCUGCGCC-GCG- -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 27642 | 0.71 | 0.200387 |
Target: 5'- cGUCGCcaUG-CCGGCGgccgCGcGCGCGGCGa -3' miRNA: 3'- -CAGCG--ACaGGCUGCa---GC-UGCGCCGCg -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 3284 | 0.71 | 0.200387 |
Target: 5'- cUCGCgaagucGUCCGACGUgCuGCGCGaGCGUg -3' miRNA: 3'- cAGCGa-----CAGGCUGCA-GcUGCGC-CGCG- -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 12536 | 0.71 | 0.211236 |
Target: 5'- uGUCGCggcGgcggCCGGCGcugCGGCGauCGGCGCa -3' miRNA: 3'- -CAGCGa--Ca---GGCUGCa--GCUGC--GCCGCG- -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 15739 | 0.71 | 0.228455 |
Target: 5'- -cCGCUacggCGGCGUCGcCGUGGCGCu -3' miRNA: 3'- caGCGAcag-GCUGCAGCuGCGCCGCG- -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 3449 | 0.7 | 0.246845 |
Target: 5'- aGUCuGCUGcCUGACGgcacgcggguuuUCGACGCGGaguGCg -3' miRNA: 3'- -CAG-CGACaGGCUGC------------AGCUGCGCCg--CG- -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 3671 | 0.7 | 0.246845 |
Target: 5'- -aCGCaag-CGGCGUCGACGCGcuGCGCa -3' miRNA: 3'- caGCGacagGCUGCAGCUGCGC--CGCG- -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 31374 | 0.7 | 0.253242 |
Target: 5'- --aGCUGgUCGGCGU-GACGCGGCuGCc -3' miRNA: 3'- cagCGACaGGCUGCAgCUGCGCCG-CG- -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 10690 | 0.7 | 0.253242 |
Target: 5'- aUUGCUGUuaucCCG-UGUCGGCaGCGGCGg -3' miRNA: 3'- cAGCGACA----GGCuGCAGCUG-CGCCGCg -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 31621 | 0.7 | 0.259775 |
Target: 5'- cUCGCUcGUCgacgaccugggCGACGUCGACGUgacGGuCGCu -3' miRNA: 3'- cAGCGA-CAG-----------GCUGCAGCUGCG---CC-GCG- -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 15862 | 0.7 | 0.266445 |
Target: 5'- aGUCGCUuucGUCgcaGAuCG-CGACGCGGgCGCg -3' miRNA: 3'- -CAGCGA---CAGg--CU-GCaGCUGCGCC-GCG- -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 4867 | 0.7 | 0.266445 |
Target: 5'- --aGCUG-CCGGCGUCGACuG-GaGCGCg -3' miRNA: 3'- cagCGACaGGCUGCAGCUG-CgC-CGCG- -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 25948 | 0.7 | 0.266445 |
Target: 5'- aUCGUUcUCCGAgacgcuCGggaucaagggCGACGCGGCGCu -3' miRNA: 3'- cAGCGAcAGGCU------GCa---------GCUGCGCCGCG- -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 32733 | 0.69 | 0.273252 |
Target: 5'- cGUUGCUGcgCaCGACGUUGGCuGCGuucGCGCc -3' miRNA: 3'- -CAGCGACa-G-GCUGCAGCUG-CGC---CGCG- -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 21818 | 0.69 | 0.28657 |
Target: 5'- -gCGCUccaacagGUCCG-CGUCGaacugGCGaCGGCGCg -3' miRNA: 3'- caGCGA-------CAGGCuGCAGC-----UGC-GCCGCG- -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 5675 | 0.69 | 0.287285 |
Target: 5'- uUCGCcGaUCCGGCGUCGagcaucagaauGCGUGGCa- -3' miRNA: 3'- cAGCGaC-AGGCUGCAGC-----------UGCGCCGcg -5' |
|||||||
27672 | 5' | -59 | NC_005882.1 | + | 15499 | 0.69 | 0.294511 |
Target: 5'- -aUGCUGUCCGA-GUCGugGUauCGCg -3' miRNA: 3'- caGCGACAGGCUgCAGCugCGccGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home