miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27672 5' -59 NC_005882.1 + 28360 0.66 0.406731
Target:  5'- -gCGCaGUCCGcgaugcgcguggcCGUCGACGCGGUc- -3'
miRNA:   3'- caGCGaCAGGCu------------GCAGCUGCGCCGcg -5'
27672 5' -59 NC_005882.1 + 19019 0.68 0.309386
Target:  5'- gGUCGCUucucUCuCGGCGUCGGC-CGGCa- -3'
miRNA:   3'- -CAGCGAc---AG-GCUGCAGCUGcGCCGcg -5'
27672 5' -59 NC_005882.1 + 19078 0.68 0.332761
Target:  5'- -cCGCauucgCCGAacuCGUCGGCGCcgGGCGCu -3'
miRNA:   3'- caGCGaca--GGCU---GCAGCUGCG--CCGCG- -5'
27672 5' -59 NC_005882.1 + 31791 0.68 0.340835
Target:  5'- -gCGCgcaccagUCGAuCGUCGACGuCGGCGUa -3'
miRNA:   3'- caGCGaca----GGCU-GCAGCUGC-GCCGCG- -5'
27672 5' -59 NC_005882.1 + 19811 0.67 0.3659
Target:  5'- -gCGCg--CCGGCGUgaCGACGacgGGCGCc -3'
miRNA:   3'- caGCGacaGGCUGCA--GCUGCg--CCGCG- -5'
27672 5' -59 NC_005882.1 + 17816 0.67 0.374532
Target:  5'- --gGCUG-CCGGUGccgCGugGUGGCGCu -3'
miRNA:   3'- cagCGACaGGCUGCa--GCugCGCCGCG- -5'
27672 5' -59 NC_005882.1 + 1968 0.67 0.374532
Target:  5'- -cCGUgucgCCGACGcgcucguaGACGCGGCGUa -3'
miRNA:   3'- caGCGaca-GGCUGCag------CUGCGCCGCG- -5'
27672 5' -59 NC_005882.1 + 8789 0.67 0.392207
Target:  5'- cUCGCcgaUGaCCGGgcUGUCGACGUGGUGg -3'
miRNA:   3'- cAGCG---ACaGGCU--GCAGCUGCGCCGCg -5'
27672 5' -59 NC_005882.1 + 7690 0.67 0.392207
Target:  5'- -aUGCUGUCgaGGCGcUCGcGgGCGGCGUc -3'
miRNA:   3'- caGCGACAGg-CUGC-AGC-UgCGCCGCG- -5'
27672 5' -59 NC_005882.1 + 8160 0.69 0.301878
Target:  5'- cGUCGCggccgGUCgGgAUGUCGAUGaucagccgacCGGCGCu -3'
miRNA:   3'- -CAGCGa----CAGgC-UGCAGCUGC----------GCCGCG- -5'
27672 5' -59 NC_005882.1 + 15499 0.69 0.294511
Target:  5'- -aUGCUGUCCGA-GUCGugGUauCGCg -3'
miRNA:   3'- caGCGACAGGCUgCAGCugCGccGCG- -5'
27672 5' -59 NC_005882.1 + 5675 0.69 0.287285
Target:  5'- uUCGCcGaUCCGGCGUCGagcaucagaauGCGUGGCa- -3'
miRNA:   3'- cAGCGaC-AGGCUGCAGC-----------UGCGCCGcg -5'
27672 5' -59 NC_005882.1 + 6254 0.75 0.112128
Target:  5'- cGUCGCgcgucaacgagcuuUGaCCGGCGUCGACaCGGCGUu -3'
miRNA:   3'- -CAGCG--------------ACaGGCUGCAGCUGcGCCGCG- -5'
27672 5' -59 NC_005882.1 + 17186 0.72 0.195147
Target:  5'- --aGCUGuaUCCGAgCcUCGACGCGGaCGCg -3'
miRNA:   3'- cagCGAC--AGGCU-GcAGCUGCGCC-GCG- -5'
27672 5' -59 NC_005882.1 + 12536 0.71 0.211236
Target:  5'- uGUCGCggcGgcggCCGGCGcugCGGCGauCGGCGCa -3'
miRNA:   3'- -CAGCGa--Ca---GGCUGCa--GCUGC--GCCGCG- -5'
27672 5' -59 NC_005882.1 + 31374 0.7 0.253242
Target:  5'- --aGCUGgUCGGCGU-GACGCGGCuGCc -3'
miRNA:   3'- cagCGACaGGCUGCAgCUGCGCCG-CG- -5'
27672 5' -59 NC_005882.1 + 31621 0.7 0.259775
Target:  5'- cUCGCUcGUCgacgaccugggCGACGUCGACGUgacGGuCGCu -3'
miRNA:   3'- cAGCGA-CAG-----------GCUGCAGCUGCG---CC-GCG- -5'
27672 5' -59 NC_005882.1 + 15862 0.7 0.266445
Target:  5'- aGUCGCUuucGUCgcaGAuCG-CGACGCGGgCGCg -3'
miRNA:   3'- -CAGCGA---CAGg--CU-GCaGCUGCGCC-GCG- -5'
27672 5' -59 NC_005882.1 + 25948 0.7 0.266445
Target:  5'- aUCGUUcUCCGAgacgcuCGggaucaagggCGACGCGGCGCu -3'
miRNA:   3'- cAGCGAcAGGCU------GCa---------GCUGCGCCGCG- -5'
27672 5' -59 NC_005882.1 + 32733 0.69 0.273252
Target:  5'- cGUUGCUGcgCaCGACGUUGGCuGCGuucGCGCc -3'
miRNA:   3'- -CAGCGACa-G-GCUGCAGCUG-CGC---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.