miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27673 3' -57 NC_005882.1 + 20169 0.66 0.51228
Target:  5'- aCAAGAcGgAACGCGcGCU-GCGcGCCCGg -3'
miRNA:   3'- -GUUCU-CgUUGCGC-CGGuUGCuCGGGC- -5'
27673 3' -57 NC_005882.1 + 19267 0.66 0.51228
Target:  5'- uCGAGuucAGCGACuGgGGCCAagaacucaauGCGGGCCUc -3'
miRNA:   3'- -GUUC---UCGUUG-CgCCGGU----------UGCUCGGGc -5'
27673 3' -57 NC_005882.1 + 25124 0.66 0.50163
Target:  5'- uCAAGgccaucguguGGCuuUGCGGCCGGCucGGGCgCCGg -3'
miRNA:   3'- -GUUC----------UCGuuGCGCCGGUUG--CUCG-GGC- -5'
27673 3' -57 NC_005882.1 + 27618 0.66 0.491079
Target:  5'- ----cGCGGCGaCcGCCGACGAgcGCCCGa -3'
miRNA:   3'- guucuCGUUGC-GcCGGUUGCU--CGGGC- -5'
27673 3' -57 NC_005882.1 + 25547 0.67 0.460069
Target:  5'- cCAGGcgaAGCAA-GCGGCCcuuGCGA-CCCGg -3'
miRNA:   3'- -GUUC---UCGUUgCGCCGGu--UGCUcGGGC- -5'
27673 3' -57 NC_005882.1 + 2090 0.67 0.459053
Target:  5'- --cGAGCA-CGCGGCCggUGuugaucuGGCCUu -3'
miRNA:   3'- guuCUCGUuGCGCCGGuuGC-------UCGGGc -5'
27673 3' -57 NC_005882.1 + 21289 0.67 0.439984
Target:  5'- ---cGGCGACgGCGGCCGGCGAcGUCa- -3'
miRNA:   3'- guucUCGUUG-CGCCGGUUGCU-CGGgc -5'
27673 3' -57 NC_005882.1 + 23225 0.67 0.439984
Target:  5'- gCAGGcgcuGGCcgGGCGCgGGCCGGCGGGCaCGa -3'
miRNA:   3'- -GUUC----UCG--UUGCG-CCGGUUGCUCGgGC- -5'
27673 3' -57 NC_005882.1 + 14135 0.67 0.43013
Target:  5'- gAAGAacaucGCGACGCuGGCCcgcGCGAGCgUGa -3'
miRNA:   3'- gUUCU-----CGUUGCG-CCGGu--UGCUCGgGC- -5'
27673 3' -57 NC_005882.1 + 21658 0.67 0.420407
Target:  5'- cCGGGAGCGcgGCGCcuuccGGUCGACGGGCauaCa -3'
miRNA:   3'- -GUUCUCGU--UGCG-----CCGGUUGCUCGg--Gc -5'
27673 3' -57 NC_005882.1 + 28699 0.67 0.420407
Target:  5'- uCGAGAGCuggccCGCGGCCcgguCGAuuGCgCCGg -3'
miRNA:   3'- -GUUCUCGuu---GCGCCGGuu--GCU--CG-GGC- -5'
27673 3' -57 NC_005882.1 + 20643 0.67 0.420407
Target:  5'- uCGAGAaCAuCGCGGUCGGCGaAGCCa- -3'
miRNA:   3'- -GUUCUcGUuGCGCCGGUUGC-UCGGgc -5'
27673 3' -57 NC_005882.1 + 12713 0.67 0.410818
Target:  5'- gGAGAcGCAGCGCGcggcggcgcucGCCGGCGA-CCUGu -3'
miRNA:   3'- gUUCU-CGUUGCGC-----------CGGUUGCUcGGGC- -5'
27673 3' -57 NC_005882.1 + 19568 0.67 0.410818
Target:  5'- uGAGcGCAAgGCGGCgGACGAccGCCg- -3'
miRNA:   3'- gUUCuCGUUgCGCCGgUUGCU--CGGgc -5'
27673 3' -57 NC_005882.1 + 23801 0.67 0.410818
Target:  5'- --cGAGCAGCGCGccgucGCCGAucagcUGcGCCCGa -3'
miRNA:   3'- guuCUCGUUGCGC-----CGGUU-----GCuCGGGC- -5'
27673 3' -57 NC_005882.1 + 10001 0.67 0.410818
Target:  5'- ---uGGCAccgGCGCGaGCCAauACG-GCCCGg -3'
miRNA:   3'- guucUCGU---UGCGC-CGGU--UGCuCGGGC- -5'
27673 3' -57 NC_005882.1 + 33981 0.67 0.410818
Target:  5'- uCAAGuGgGACGUGGCCggUGAGUUg- -3'
miRNA:   3'- -GUUCuCgUUGCGCCGGuuGCUCGGgc -5'
27673 3' -57 NC_005882.1 + 5782 0.68 0.401366
Target:  5'- gCAGGAGCGcgGCGgGGCCGACcuGCUg- -3'
miRNA:   3'- -GUUCUCGU--UGCgCCGGUUGcuCGGgc -5'
27673 3' -57 NC_005882.1 + 12235 0.68 0.382882
Target:  5'- uGGGAGCGcaucACgGCGGCCGgugcauGCGAGCgCa -3'
miRNA:   3'- gUUCUCGU----UG-CGCCGGU------UGCUCGgGc -5'
27673 3' -57 NC_005882.1 + 22956 0.68 0.373856
Target:  5'- cCGGGuGCGACgGCGGCCAagGCGA-CCUa -3'
miRNA:   3'- -GUUCuCGUUG-CGCCGGU--UGCUcGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.