miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27673 3' -57 NC_005882.1 + 22766 1.08 0.000429
Target:  5'- aCAAGAGCAACGCGGCCAACGAGCCCGu -3'
miRNA:   3'- -GUUCUCGUUGCGCCGGUUGCUCGGGC- -5'
27673 3' -57 NC_005882.1 + 27084 0.87 0.017137
Target:  5'- aGGGAGCAgcGCGCGGCCAACGAcgagcgcgccgcGCCCGa -3'
miRNA:   3'- gUUCUCGU--UGCGCCGGUUGCU------------CGGGC- -5'
27673 3' -57 NC_005882.1 + 14239 0.76 0.109767
Target:  5'- uCAAGAGCAgcggccuguccgaugACGCGGCCGACGcGaUCCGu -3'
miRNA:   3'- -GUUCUCGU---------------UGCGCCGGUUGCuC-GGGC- -5'
27673 3' -57 NC_005882.1 + 4870 0.76 0.111359
Target:  5'- gCGAGAGCGgcgcgaguucgacGCGCGGCgCAACGAGgUCGu -3'
miRNA:   3'- -GUUCUCGU-------------UGCGCCG-GUUGCUCgGGC- -5'
27673 3' -57 NC_005882.1 + 11998 0.75 0.12887
Target:  5'- --cGGGCAcuuGCGCGGCC-ACGGGCgCGg -3'
miRNA:   3'- guuCUCGU---UGCGCCGGuUGCUCGgGC- -5'
27673 3' -57 NC_005882.1 + 1887 0.75 0.13259
Target:  5'- gCGAGAcGCu-CGCGGCCAGCGAaaguGCUCGa -3'
miRNA:   3'- -GUUCU-CGuuGCGCCGGUUGCU----CGGGC- -5'
27673 3' -57 NC_005882.1 + 4176 0.74 0.152712
Target:  5'- ----cGCGACGaCGGCCAG-GAGCCCGc -3'
miRNA:   3'- guucuCGUUGC-GCCGGUUgCUCGGGC- -5'
27673 3' -57 NC_005882.1 + 25499 0.74 0.157056
Target:  5'- --cGAGCuGCGCGGCCAguACGAccGCCuCGg -3'
miRNA:   3'- guuCUCGuUGCGCCGGU--UGCU--CGG-GC- -5'
27673 3' -57 NC_005882.1 + 17871 0.72 0.206969
Target:  5'- uCAAGGuCGAgGCGGCCGGCGAccGCCuCGg -3'
miRNA:   3'- -GUUCUcGUUgCGCCGGUUGCU--CGG-GC- -5'
27673 3' -57 NC_005882.1 + 13017 0.72 0.212653
Target:  5'- uCAAGGGCGucaucgGCGCgGGCCGGCGcaacAGCuCCGg -3'
miRNA:   3'- -GUUCUCGU------UGCG-CCGGUUGC----UCG-GGC- -5'
27673 3' -57 NC_005882.1 + 29233 0.72 0.224423
Target:  5'- --cGAGCAACgGCGcGCCGGCGuAGCCg- -3'
miRNA:   3'- guuCUCGUUG-CGC-CGGUUGC-UCGGgc -5'
27673 3' -57 NC_005882.1 + 13726 0.71 0.230513
Target:  5'- --cGGGCAucGCGCGGCCGGCcaaguacugGAGCCa- -3'
miRNA:   3'- guuCUCGU--UGCGCCGGUUG---------CUCGGgc -5'
27673 3' -57 NC_005882.1 + 26943 0.71 0.236742
Target:  5'- -uGGGGCgGGCGCGGCCGGCaAGUUCGc -3'
miRNA:   3'- guUCUCG-UUGCGCCGGUUGcUCGGGC- -5'
27673 3' -57 NC_005882.1 + 3322 0.71 0.236742
Target:  5'- gCGAcGGCGGC-CGGCCGACGAuccagaucgGCCCGu -3'
miRNA:   3'- -GUUcUCGUUGcGCCGGUUGCU---------CGGGC- -5'
27673 3' -57 NC_005882.1 + 31372 0.71 0.249622
Target:  5'- --cGAGCuggucggcguGACGCGGCUgccGGCGcAGCCCGc -3'
miRNA:   3'- guuCUCG----------UUGCGCCGG---UUGC-UCGGGC- -5'
27673 3' -57 NC_005882.1 + 21680 0.71 0.256276
Target:  5'- aCAAGcugacgaucGGCGACccgaGCGGcCCGGCGAcGCCCGa -3'
miRNA:   3'- -GUUC---------UCGUUG----CGCC-GGUUGCU-CGGGC- -5'
27673 3' -57 NC_005882.1 + 209 0.71 0.26102
Target:  5'- --cGAGCcuugccuucggccuGACGCGGCCcucGCGGGCCUu -3'
miRNA:   3'- guuCUCG--------------UUGCGCCGGu--UGCUCGGGc -5'
27673 3' -57 NC_005882.1 + 11554 0.7 0.277111
Target:  5'- uCAAGcGCuuccCGCGGCUGACGAGCUgGc -3'
miRNA:   3'- -GUUCuCGuu--GCGCCGGUUGCUCGGgC- -5'
27673 3' -57 NC_005882.1 + 25971 0.7 0.294736
Target:  5'- uCAAGGGCGACGCGGCgcugaaggaggcguuCAaccGCGcGGCCUa -3'
miRNA:   3'- -GUUCUCGUUGCGCCG---------------GU---UGC-UCGGGc -5'
27673 3' -57 NC_005882.1 + 26776 0.7 0.299277
Target:  5'- gAAGGucGCGAcgcuCGCGGCCGGCugGGGCCUGa -3'
miRNA:   3'- gUUCU--CGUU----GCGCCGGUUG--CUCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.