miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27673 5' -55.7 NC_005882.1 + 26161 0.66 0.576435
Target:  5'- cGGCaGUGGCGACGaaGCCGUGaCGAAuCUg -3'
miRNA:   3'- -CUG-CGCCGUUGCc-CGGCAC-GUUUuGA- -5'
27673 5' -55.7 NC_005882.1 + 1617 0.66 0.565203
Target:  5'- uGCGCGGCGACGc-CCGaUGCGAugGGCg -3'
miRNA:   3'- cUGCGCCGUUGCccGGC-ACGUU--UUGa -5'
27673 5' -55.7 NC_005882.1 + 2264 0.66 0.55403
Target:  5'- gGAUGCGGUAGCGG-CCGU-CGAAc-- -3'
miRNA:   3'- -CUGCGCCGUUGCCcGGCAcGUUUuga -5'
27673 5' -55.7 NC_005882.1 + 1872 0.66 0.55403
Target:  5'- cGugGCGGCAgaaACGGGCa-UGaCGAAAa- -3'
miRNA:   3'- -CugCGCCGU---UGCCCGgcAC-GUUUUga -5'
27673 5' -55.7 NC_005882.1 + 26949 0.66 0.531889
Target:  5'- gGGCGCGGCcggcaaguuCGcGGCCGUGaucGGGCg -3'
miRNA:   3'- -CUGCGCCGuu-------GC-CCGGCACgu-UUUGa -5'
27673 5' -55.7 NC_005882.1 + 29237 0.66 0.531889
Target:  5'- cACGCGaGCAACGGcgcGCCG-GCGuAGCc -3'
miRNA:   3'- cUGCGC-CGUUGCC---CGGCaCGUuUUGa -5'
27673 5' -55.7 NC_005882.1 + 21653 0.66 0.531889
Target:  5'- aGCGCGGCGccuuccggucgACGGGCauacagccaGUGCcGGGCc -3'
miRNA:   3'- cUGCGCCGU-----------UGCCCGg--------CACGuUUUGa -5'
27673 5' -55.7 NC_005882.1 + 5777 0.66 0.531889
Target:  5'- aGCGCGGCG--GGGCCGaccUGCu--GCa -3'
miRNA:   3'- cUGCGCCGUugCCCGGC---ACGuuuUGa -5'
27673 5' -55.7 NC_005882.1 + 18023 0.66 0.520938
Target:  5'- -uCGCGGCGcgugACuGGGUCGacggUGCGGAACg -3'
miRNA:   3'- cuGCGCCGU----UG-CCCGGC----ACGUUUUGa -5'
27673 5' -55.7 NC_005882.1 + 11881 0.66 0.520938
Target:  5'- cGCGCGGCGAagcauGGCCGcgGCGAAcaccaGCUc -3'
miRNA:   3'- cUGCGCCGUUgc---CCGGCa-CGUUU-----UGA- -5'
27673 5' -55.7 NC_005882.1 + 3928 0.67 0.510076
Target:  5'- cGCGUGGCuuuccuucaGGGCCuUGUGGAGCUg -3'
miRNA:   3'- cUGCGCCGuug------CCCGGcACGUUUUGA- -5'
27673 5' -55.7 NC_005882.1 + 19208 0.67 0.49931
Target:  5'- cACGCccGGCAcCGGGuuGUGCG--GCg -3'
miRNA:   3'- cUGCG--CCGUuGCCCggCACGUuuUGa -5'
27673 5' -55.7 NC_005882.1 + 29700 0.67 0.488646
Target:  5'- --aGUGGCAGCGGGCaa-GCGGAAa- -3'
miRNA:   3'- cugCGCCGUUGCCCGgcaCGUUUUga -5'
27673 5' -55.7 NC_005882.1 + 4891 0.67 0.488646
Target:  5'- cGCGCGGCGcaACGaGGUCGUGUuccguGCc -3'
miRNA:   3'- cUGCGCCGU--UGC-CCGGCACGuuu--UGa -5'
27673 5' -55.7 NC_005882.1 + 12723 0.67 0.47809
Target:  5'- cGCGCGGCGGCGcucGCCG-GCGAc--- -3'
miRNA:   3'- cUGCGCCGUUGCc--CGGCaCGUUuuga -5'
27673 5' -55.7 NC_005882.1 + 13013 0.67 0.467647
Target:  5'- gGGCGUcaucGGC-GCGGGCCG-GCGcAACa -3'
miRNA:   3'- -CUGCG----CCGuUGCCCGGCaCGUuUUGa -5'
27673 5' -55.7 NC_005882.1 + 4216 0.68 0.457324
Target:  5'- -uCGCGGaauCGGGCgGcgGCAAGACg -3'
miRNA:   3'- cuGCGCCguuGCCCGgCa-CGUUUUGa -5'
27673 5' -55.7 NC_005882.1 + 951 0.68 0.444088
Target:  5'- -uCGCGGCAucuggcuugagcugGCGGaucggggcGUCGUGCAAAACc -3'
miRNA:   3'- cuGCGCCGU--------------UGCC--------CGGCACGUUUUGa -5'
27673 5' -55.7 NC_005882.1 + 25454 0.68 0.437051
Target:  5'- gGACGCgauGGC-GCGGGCCGuUGCGc---- -3'
miRNA:   3'- -CUGCG---CCGuUGCCCGGC-ACGUuuuga -5'
27673 5' -55.7 NC_005882.1 + 1337 0.68 0.437051
Target:  5'- aACGCcuGgAGCGGGCCGUGCc--GCUc -3'
miRNA:   3'- cUGCGc-CgUUGCCCGGCACGuuuUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.