miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27673 5' -55.7 NC_005882.1 + 22800 1.07 0.000719
Target:  5'- uGACGCGGCAACGGGCCGUGCAAAACUc -3'
miRNA:   3'- -CUGCGCCGUUGCCCGGCACGUUUUGA- -5'
27673 5' -55.7 NC_005882.1 + 11990 0.74 0.192234
Target:  5'- uGCGCGGCcACGGGCgCGgcgGCGccGAGCa -3'
miRNA:   3'- cUGCGCCGuUGCCCG-GCa--CGU--UUUGa -5'
27673 5' -55.7 NC_005882.1 + 21284 0.73 0.197635
Target:  5'- cGAUGCGGCGACGGcgGCCG-GCGAc--- -3'
miRNA:   3'- -CUGCGCCGUUGCC--CGGCaCGUUuuga -5'
27673 5' -55.7 NC_005882.1 + 15253 0.73 0.226655
Target:  5'- -cCGUGaGCAGCGGGCCGaGCGucGCUu -3'
miRNA:   3'- cuGCGC-CGUUGCCCGGCaCGUuuUGA- -5'
27673 5' -55.7 NC_005882.1 + 191 0.71 0.280511
Target:  5'- uGACGCGGCccucGCGGGCCuUGCcccagaGAGAUa -3'
miRNA:   3'- -CUGCGCCGu---UGCCCGGcACG------UUUUGa -5'
27673 5' -55.7 NC_005882.1 + 23227 0.69 0.36147
Target:  5'- aGGCGCuGGCcgggcGCGGGCCG-GCGGGcACg -3'
miRNA:   3'- -CUGCG-CCGu----UGCCCGGCaCGUUU-UGa -5'
27673 5' -55.7 NC_005882.1 + 29752 0.69 0.398112
Target:  5'- -cUGCGGCuuuccgcACGGGCCGgcuccaagGCAAcGCUg -3'
miRNA:   3'- cuGCGCCGu------UGCCCGGCa-------CGUUuUGA- -5'
27673 5' -55.7 NC_005882.1 + 36112 0.68 0.407638
Target:  5'- aACGCGGCAGCaGGCCaaaaGCGAacguGACg -3'
miRNA:   3'- cUGCGCCGUUGcCCGGca--CGUU----UUGa -5'
27673 5' -55.7 NC_005882.1 + 31555 0.68 0.417305
Target:  5'- cGACGUGGCcGCGa--CGUGCGAAACc -3'
miRNA:   3'- -CUGCGCCGuUGCccgGCACGUUUUGa -5'
27673 5' -55.7 NC_005882.1 + 3309 0.68 0.417305
Target:  5'- cACGCGGUAGCccaGGCCGcGCAGcGCc -3'
miRNA:   3'- cUGCGCCGUUGc--CCGGCaCGUUuUGa -5'
27673 5' -55.7 NC_005882.1 + 12538 0.68 0.417305
Target:  5'- -uCGCGGCGGC-GGCCG-GCGcuGCg -3'
miRNA:   3'- cuGCGCCGUUGcCCGGCaCGUuuUGa -5'
27673 5' -55.7 NC_005882.1 + 1337 0.68 0.437051
Target:  5'- aACGCcuGgAGCGGGCCGUGCc--GCUc -3'
miRNA:   3'- cUGCGc-CgUUGCCCGGCACGuuuUGA- -5'
27673 5' -55.7 NC_005882.1 + 25454 0.68 0.437051
Target:  5'- gGACGCgauGGC-GCGGGCCGuUGCGc---- -3'
miRNA:   3'- -CUGCG---CCGuUGCCCGGC-ACGUuuuga -5'
27673 5' -55.7 NC_005882.1 + 951 0.68 0.444088
Target:  5'- -uCGCGGCAucuggcuugagcugGCGGaucggggcGUCGUGCAAAACc -3'
miRNA:   3'- cuGCGCCGU--------------UGCC--------CGGCACGUUUUGa -5'
27673 5' -55.7 NC_005882.1 + 4216 0.68 0.457324
Target:  5'- -uCGCGGaauCGGGCgGcgGCAAGACg -3'
miRNA:   3'- cuGCGCCguuGCCCGgCa-CGUUUUGa -5'
27673 5' -55.7 NC_005882.1 + 13013 0.67 0.467647
Target:  5'- gGGCGUcaucGGC-GCGGGCCG-GCGcAACa -3'
miRNA:   3'- -CUGCG----CCGuUGCCCGGCaCGUuUUGa -5'
27673 5' -55.7 NC_005882.1 + 12723 0.67 0.47809
Target:  5'- cGCGCGGCGGCGcucGCCG-GCGAc--- -3'
miRNA:   3'- cUGCGCCGUUGCc--CGGCaCGUUuuga -5'
27673 5' -55.7 NC_005882.1 + 4891 0.67 0.488646
Target:  5'- cGCGCGGCGcaACGaGGUCGUGUuccguGCc -3'
miRNA:   3'- cUGCGCCGU--UGC-CCGGCACGuuu--UGa -5'
27673 5' -55.7 NC_005882.1 + 29700 0.67 0.488646
Target:  5'- --aGUGGCAGCGGGCaa-GCGGAAa- -3'
miRNA:   3'- cugCGCCGUUGCCCGgcaCGUUUUga -5'
27673 5' -55.7 NC_005882.1 + 19208 0.67 0.49931
Target:  5'- cACGCccGGCAcCGGGuuGUGCG--GCg -3'
miRNA:   3'- cUGCG--CCGUuGCCCggCACGUuuUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.