miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27674 3' -60.5 NC_005882.1 + 29936 0.66 0.354668
Target:  5'- gAGCAGCUCGaUCGaCG-CACcGGCGg- -3'
miRNA:   3'- -UCGUCGAGC-AGCcGCaGUGcCCGCag -5'
27674 3' -60.5 NC_005882.1 + 19085 0.66 0.346319
Target:  5'- cGCcgaaCUCGUCGGCG-C-CGGGCGc- -3'
miRNA:   3'- uCGuc--GAGCAGCCGCaGuGCCCGCag -5'
27674 3' -60.5 NC_005882.1 + 13071 0.66 0.338111
Target:  5'- cGGCGGCUggCGUCGaCGUgGUGGGCGa- -3'
miRNA:   3'- -UCGUCGA--GCAGCcGCAgUGCCCGCag -5'
27674 3' -60.5 NC_005882.1 + 22667 0.66 0.330046
Target:  5'- cGCAGCUCGcCGGCuUCACGaucccgcaaGCGcUCg -3'
miRNA:   3'- uCGUCGAGCaGCCGcAGUGCc--------CGC-AG- -5'
27674 3' -60.5 NC_005882.1 + 7845 0.66 0.322123
Target:  5'- cGGCgagaGGUUCGUCgccuuGGUGaguUCGcCGGGCGUCa -3'
miRNA:   3'- -UCG----UCGAGCAG-----CCGC---AGU-GCCCGCAG- -5'
27674 3' -60.5 NC_005882.1 + 26958 0.66 0.314344
Target:  5'- cGGCaAGUUCG-CGGcCGUgAuCGGGCGUg -3'
miRNA:   3'- -UCG-UCGAGCaGCC-GCAgU-GCCCGCAg -5'
27674 3' -60.5 NC_005882.1 + 11852 0.67 0.306707
Target:  5'- -cCAGCUCGUagcccuUGGCGacUCGauagucggcuuCGGGCGUCa -3'
miRNA:   3'- ucGUCGAGCA------GCCGC--AGU-----------GCCCGCAG- -5'
27674 3' -60.5 NC_005882.1 + 10882 0.67 0.306707
Target:  5'- uGGUcgugGGUUCGUCGcaGCGcgCGCGGGCG-Ca -3'
miRNA:   3'- -UCG----UCGAGCAGC--CGCa-GUGCCCGCaG- -5'
27674 3' -60.5 NC_005882.1 + 12718 0.67 0.291862
Target:  5'- cGCAGCgcgCGgCGGCGcUCGCcGGCGa- -3'
miRNA:   3'- uCGUCGa--GCaGCCGC-AGUGcCCGCag -5'
27674 3' -60.5 NC_005882.1 + 13821 0.67 0.270658
Target:  5'- aAGCGcGCUCGUCgagGGCaacuUCACGGGCu-- -3'
miRNA:   3'- -UCGU-CGAGCAG---CCGc---AGUGCCCGcag -5'
27674 3' -60.5 NC_005882.1 + 11843 0.68 0.26387
Target:  5'- cGCGGUgaUCGuccUCGGCGUCGuagucGGCGUCg -3'
miRNA:   3'- uCGUCG--AGC---AGCCGCAGUgc---CCGCAG- -5'
27674 3' -60.5 NC_005882.1 + 34450 0.68 0.257222
Target:  5'- cAGCacgaAGCUCGcaacgaCGGCGUUugugcaGCGGGcCGUCg -3'
miRNA:   3'- -UCG----UCGAGCa-----GCCGCAG------UGCCC-GCAG- -5'
27674 3' -60.5 NC_005882.1 + 6243 0.69 0.220177
Target:  5'- cAGCAucGCuUCGUCGcGCGUCaACGagcuuugaccGGCGUCg -3'
miRNA:   3'- -UCGU--CG-AGCAGC-CGCAG-UGC----------CCGCAG- -5'
27674 3' -60.5 NC_005882.1 + 12084 0.69 0.208879
Target:  5'- cGuCAGCgUCGUUGGUGcgCGCGGGaUGUCu -3'
miRNA:   3'- uC-GUCG-AGCAGCCGCa-GUGCCC-GCAG- -5'
27674 3' -60.5 NC_005882.1 + 29641 0.69 0.198085
Target:  5'- aAGaAGCUCGUcgucuaCGGCGUgACGGGUGa- -3'
miRNA:   3'- -UCgUCGAGCA------GCCGCAgUGCCCGCag -5'
27674 3' -60.5 NC_005882.1 + 27559 0.7 0.18778
Target:  5'- gGGC-GCUCGUCGGCGgucgccgCGCGcGCGg- -3'
miRNA:   3'- -UCGuCGAGCAGCCGCa------GUGCcCGCag -5'
27674 3' -60.5 NC_005882.1 + 22017 0.7 0.168581
Target:  5'- cGCGGCUgaacaaccaUGUCGGUGUCgACGGucGUGUCg -3'
miRNA:   3'- uCGUCGA---------GCAGCCGCAG-UGCC--CGCAG- -5'
27674 3' -60.5 NC_005882.1 + 5343 0.71 0.161405
Target:  5'- cGUGGCgaggaauacgacgugUCGUCGGUG-C-CGGGCGUCa -3'
miRNA:   3'- uCGUCG---------------AGCAGCCGCaGuGCCCGCAG- -5'
27674 3' -60.5 NC_005882.1 + 17208 0.71 0.151158
Target:  5'- gAGCAGCUCGUCGGCacUCGCGc-CGUUc -3'
miRNA:   3'- -UCGUCGAGCAGCCGc-AGUGCccGCAG- -5'
27674 3' -60.5 NC_005882.1 + 31369 0.72 0.139182
Target:  5'- uGGCgAGCUgGUCGGCGUgACGcGGCu-- -3'
miRNA:   3'- -UCG-UCGAgCAGCCGCAgUGC-CCGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.