miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27674 5' -54.2 NC_005882.1 + 22028 0.66 0.702799
Target:  5'- -cG-CGGCGGUGccAUCGACGugcucgaucacGUUCGCAc -3'
miRNA:   3'- gaCaGCCGCUAC--UAGCUGC-----------UAGGCGU- -5'
27674 5' -54.2 NC_005882.1 + 32049 0.66 0.69278
Target:  5'- -cGUCGGCGAUcggacGUCGACGuaaucggucagcggCCGCc -3'
miRNA:   3'- gaCAGCCGCUAc----UAGCUGCua------------GGCGu -5'
27674 5' -54.2 NC_005882.1 + 19036 0.66 0.691664
Target:  5'- uUGUCGcGCgGAUGGccgaUGACGAUCgGCGc -3'
miRNA:   3'- gACAGC-CG-CUACUa---GCUGCUAGgCGU- -5'
27674 5' -54.2 NC_005882.1 + 31367 0.66 0.680467
Target:  5'- --cUUGGCGAgcUGGUCGGCGugaCGCGg -3'
miRNA:   3'- gacAGCCGCU--ACUAGCUGCuagGCGU- -5'
27674 5' -54.2 NC_005882.1 + 399 0.66 0.680467
Target:  5'- -cGUUGGCGAg---CGGCGAUCuccuCGCGc -3'
miRNA:   3'- gaCAGCCGCUacuaGCUGCUAG----GCGU- -5'
27674 5' -54.2 NC_005882.1 + 20717 0.66 0.669221
Target:  5'- -cGUCGGCauaGAUGGcuUCGcCGA-CCGCGa -3'
miRNA:   3'- gaCAGCCG---CUACU--AGCuGCUaGGCGU- -5'
27674 5' -54.2 NC_005882.1 + 34209 0.66 0.669221
Target:  5'- ---cUGGCGuuaAUGGUgCGGCGAUCCGUu -3'
miRNA:   3'- gacaGCCGC---UACUA-GCUGCUAGGCGu -5'
27674 5' -54.2 NC_005882.1 + 24900 0.66 0.657939
Target:  5'- uUGcUCGGCGGcUGAUCGcUGGgcgcCCGCAu -3'
miRNA:   3'- gAC-AGCCGCU-ACUAGCuGCUa---GGCGU- -5'
27674 5' -54.2 NC_005882.1 + 22473 0.66 0.646632
Target:  5'- gCUGgggCGcGCGGgcuUGGUCGACGGcgCUGCGg -3'
miRNA:   3'- -GACa--GC-CGCU---ACUAGCUGCUa-GGCGU- -5'
27674 5' -54.2 NC_005882.1 + 17672 0.67 0.623986
Target:  5'- ---aUGGCGAacGUCGACGAUCgGCc -3'
miRNA:   3'- gacaGCCGCUacUAGCUGCUAGgCGu -5'
27674 5' -54.2 NC_005882.1 + 14382 0.67 0.612669
Target:  5'- ---aCGGCGGg---CGcACGAUCCGCAc -3'
miRNA:   3'- gacaGCCGCUacuaGC-UGCUAGGCGU- -5'
27674 5' -54.2 NC_005882.1 + 1932 0.67 0.612669
Target:  5'- -cGUUGGCGAUG-UCGAgCGGaaUCUGUAc -3'
miRNA:   3'- gaCAGCCGCUACuAGCU-GCU--AGGCGU- -5'
27674 5' -54.2 NC_005882.1 + 30991 0.67 0.590099
Target:  5'- aUGUUGugcGCGAgucGGUCGacGCGAUCCGCc -3'
miRNA:   3'- gACAGC---CGCUa--CUAGC--UGCUAGGCGu -5'
27674 5' -54.2 NC_005882.1 + 13618 0.67 0.590099
Target:  5'- aUGUCGGCGAaGAUCGAgCGcaUCGUc -3'
miRNA:   3'- gACAGCCGCUaCUAGCU-GCuaGGCGu -5'
27674 5' -54.2 NC_005882.1 + 24811 0.67 0.590099
Target:  5'- -aGUCGGCGA-GGUCGA--GUUCGCc -3'
miRNA:   3'- gaCAGCCGCUaCUAGCUgcUAGGCGu -5'
27674 5' -54.2 NC_005882.1 + 5302 0.68 0.578865
Target:  5'- -gGUCGGCGAgaagcUGAUGAUCaCGCGc -3'
miRNA:   3'- gaCAGCCGCUacua-GCUGCUAG-GCGU- -5'
27674 5' -54.2 NC_005882.1 + 13742 0.69 0.512735
Target:  5'- --cUCGGCGAUG-UCGACG--CCGUAg -3'
miRNA:   3'- gacAGCCGCUACuAGCUGCuaGGCGU- -5'
27674 5' -54.2 NC_005882.1 + 3471 0.69 0.501999
Target:  5'- -cGUCGGCGGUGA-CGACcggcacgcccaGGcCCGCGg -3'
miRNA:   3'- gaCAGCCGCUACUaGCUG-----------CUaGGCGU- -5'
27674 5' -54.2 NC_005882.1 + 10865 0.69 0.470409
Target:  5'- gCUGUCcGCGAucaaccUGGUCGugGGUUCGUc -3'
miRNA:   3'- -GACAGcCGCU------ACUAGCugCUAGGCGu -5'
27674 5' -54.2 NC_005882.1 + 564 0.69 0.470409
Target:  5'- --aUCGGCaGAUuuUCGACGAauUCCGCGg -3'
miRNA:   3'- gacAGCCG-CUAcuAGCUGCU--AGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.