miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 29543 0.68 0.623706
Target:  5'- aGCAGUUCaa--GCGCGCCGAcuugaagUCGAUUc -3'
miRNA:   3'- -CGUCAAGcagcUGCGCGGCU-------AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 12463 0.68 0.591359
Target:  5'- cGCGGUUC-UCGcggaaagcggccGCGUGCCGGcCGGCg -3'
miRNA:   3'- -CGUCAAGcAGC------------UGCGCGGCUaGCUGg -5'
27675 3' -54.1 NC_005882.1 + 8756 0.68 0.591359
Target:  5'- gGCAGUUgG-CGACgagcaGCGCCGAaaCGACg -3'
miRNA:   3'- -CGUCAAgCaGCUG-----CGCGGCUa-GCUGg -5'
27675 3' -54.1 NC_005882.1 + 28647 0.68 0.602491
Target:  5'- cGC-GUUCGccaagcCGccuUGCGCCGAUCgGACCg -3'
miRNA:   3'- -CGuCAAGCa-----GCu--GCGCGGCUAG-CUGG- -5'
27675 3' -54.1 NC_005882.1 + 31618 0.68 0.580262
Target:  5'- uGCGGUUucgcaCGUCG-CGgccaCGUCGAUCGACa -3'
miRNA:   3'- -CGUCAA-----GCAGCuGC----GCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 10447 0.68 0.602491
Target:  5'- uCAGUgcuugCGUCG-UGCGCUGAgaUCGcGCCa -3'
miRNA:   3'- cGUCAa----GCAGCuGCGCGGCU--AGC-UGG- -5'
27675 3' -54.1 NC_005882.1 + 28605 0.68 0.591359
Target:  5'- cGCAGUaUUGcUGGCGCGCagGAUgcCGGCCg -3'
miRNA:   3'- -CGUCA-AGCaGCUGCGCGg-CUA--GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 28361 0.68 0.613649
Target:  5'- cGCAGUcCG-CGAUGCGCgUGGccgUCGACg -3'
miRNA:   3'- -CGUCAaGCaGCUGCGCG-GCU---AGCUGg -5'
27675 3' -54.1 NC_005882.1 + 16226 0.68 0.624824
Target:  5'- ----gUCGUCGGCaaGCCGGcCGACUg -3'
miRNA:   3'- cgucaAGCAGCUGcgCGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 27003 0.68 0.602491
Target:  5'- -gGGaUUCGggcgCGGCGCGCuCGucGUUGGCCg -3'
miRNA:   3'- cgUC-AAGCa---GCUGCGCG-GC--UAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 31798 0.68 0.591359
Target:  5'- cCAGUcgaUCGUCGACGuCGgCGuaAUCGGuCCg -3'
miRNA:   3'- cGUCA---AGCAGCUGC-GCgGC--UAGCU-GG- -5'
27675 3' -54.1 NC_005882.1 + 19543 0.68 0.591359
Target:  5'- aGCAGcUCGcCGACGCGCaggCGcgUGAgCg -3'
miRNA:   3'- -CGUCaAGCaGCUGCGCG---GCuaGCUgG- -5'
27675 3' -54.1 NC_005882.1 + 27850 0.68 0.624824
Target:  5'- aGCAGgUCGUCGAgcaUGCGCUccaGGUCGcGCa -3'
miRNA:   3'- -CGUCaAGCAGCU---GCGCGG---CUAGC-UGg -5'
27675 3' -54.1 NC_005882.1 + 9489 0.68 0.591359
Target:  5'- cGCug--CGaUUGGCGCGCUGG-CGGCCg -3'
miRNA:   3'- -CGucaaGC-AGCUGCGCGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 4522 0.68 0.580262
Target:  5'- cGCAGgucgaggUCGUCGA-G-GCUGcgCGGCCa -3'
miRNA:   3'- -CGUCa------AGCAGCUgCgCGGCuaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 32075 0.68 0.580262
Target:  5'- cGCA---CGUCGAuCGCGUa-GUCGACCg -3'
miRNA:   3'- -CGUcaaGCAGCU-GCGCGgcUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 17110 0.69 0.547272
Target:  5'- uCAGUgcggCGUCGAgCGCGuCCuGGUCGGgCg -3'
miRNA:   3'- cGUCAa---GCAGCU-GCGC-GG-CUAGCUgG- -5'
27675 3' -54.1 NC_005882.1 + 12947 0.69 0.558211
Target:  5'- aGCuGUUgCGcCGGCccGCGCCGAU-GACCc -3'
miRNA:   3'- -CGuCAA-GCaGCUG--CGCGGCUAgCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23740 0.69 0.558211
Target:  5'- aGCuGaUCGgcgaCGGCGCGCUGcUCGGCUu -3'
miRNA:   3'- -CGuCaAGCa---GCUGCGCGGCuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 29863 0.69 0.547272
Target:  5'- -aGGUUCGUcCGGucaaGCGCCGcgCGugCc -3'
miRNA:   3'- cgUCAAGCA-GCUg---CGCGGCuaGCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.