miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 12947 0.69 0.558211
Target:  5'- aGCuGUUgCGcCGGCccGCGCCGAU-GACCc -3'
miRNA:   3'- -CGuCAA-GCaGCUG--CGCGGCUAgCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23740 0.69 0.558211
Target:  5'- aGCuGaUCGgcgaCGGCGCGCUGcUCGGCUu -3'
miRNA:   3'- -CGuCaAGCa---GCUGCGCGGCuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 621 0.69 0.547272
Target:  5'- aGCuGGUUCGccuggUCG--GCGCCGAugUCGGCCa -3'
miRNA:   3'- -CG-UCAAGC-----AGCugCGCGGCU--AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 27557 0.69 0.536403
Target:  5'- uCGGgcgcUCGUCGGCGguCGCCGcgcgcgCGGCCg -3'
miRNA:   3'- cGUCa---AGCAGCUGC--GCGGCua----GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 17110 0.69 0.547272
Target:  5'- uCAGUgcggCGUCGAgCGCGuCCuGGUCGGgCg -3'
miRNA:   3'- cGUCAa---GCAGCU-GCGC-GG-CUAGCUgG- -5'
27675 3' -54.1 NC_005882.1 + 3541 0.7 0.504278
Target:  5'- cGCGGgcC-UgGGCGUGCCGGUCGucACCg -3'
miRNA:   3'- -CGUCaaGcAgCUGCGCGGCUAGC--UGG- -5'
27675 3' -54.1 NC_005882.1 + 19931 0.7 0.504278
Target:  5'- uGCGGccgUCcagcUCGGCGCGCUucgGAUCGACg -3'
miRNA:   3'- -CGUCa--AGc---AGCUGCGCGG---CUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 16277 0.7 0.493753
Target:  5'- cCGGcUUGcCGACGaCGUCGAUCGGCa -3'
miRNA:   3'- cGUCaAGCaGCUGC-GCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 17255 0.7 0.490615
Target:  5'- uGCAGcgCGUC--CGCGUCGAggcucggauacagcUCGGCCa -3'
miRNA:   3'- -CGUCaaGCAGcuGCGCGGCU--------------AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 12378 0.7 0.48333
Target:  5'- gGCAGc-CGUC-ACGCGCUGAUCgcgauaGACCc -3'
miRNA:   3'- -CGUCaaGCAGcUGCGCGGCUAG------CUGG- -5'
27675 3' -54.1 NC_005882.1 + 14300 0.7 0.493753
Target:  5'- uGCAGgaugacgacCGUCGAaaccCGUGCgGAUCGugCg -3'
miRNA:   3'- -CGUCaa-------GCAGCU----GCGCGgCUAGCugG- -5'
27675 3' -54.1 NC_005882.1 + 25005 0.7 0.48333
Target:  5'- aGCGGcgCGUCGACGCGacaaagcaaucCUGAUgucaggCGGCCc -3'
miRNA:   3'- -CGUCaaGCAGCUGCGC-----------GGCUA------GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 15412 0.7 0.473014
Target:  5'- gGCGGcgCcuUCGACGCGCgGGgcaaCGGCCa -3'
miRNA:   3'- -CGUCaaGc-AGCUGCGCGgCUa---GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 36676 0.7 0.473014
Target:  5'- --cGcgCGUCGACGUGCUGAaauaUCGcGCCg -3'
miRNA:   3'- cguCaaGCAGCUGCGCGGCU----AGC-UGG- -5'
27675 3' -54.1 NC_005882.1 + 19854 0.7 0.45172
Target:  5'- gGCgAGaaCGUCGauccgaaGCGCGCCGAgcuggaCGGCCg -3'
miRNA:   3'- -CG-UCaaGCAGC-------UGCGCGGCUa-----GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 27651 0.7 0.490615
Target:  5'- cGCGGccugCGUCGccaugccggcggccGCGCGCgCGG-CGACCg -3'
miRNA:   3'- -CGUCaa--GCAGC--------------UGCGCG-GCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 865 0.7 0.452722
Target:  5'- cGCA---CGUCGACGCGCuCGAaUGGCUc -3'
miRNA:   3'- -CGUcaaGCAGCUGCGCG-GCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 33341 0.7 0.46281
Target:  5'- uGCAG-UCGUCGccaGCGCCG-UCGAg- -3'
miRNA:   3'- -CGUCaAGCAGCug-CGCGGCuAGCUgg -5'
27675 3' -54.1 NC_005882.1 + 20729 0.7 0.473014
Target:  5'- aGCGGUccuugUCGUCGGCauagauggcuuCGCCGAccgcgauguucUCGACCu -3'
miRNA:   3'- -CGUCA-----AGCAGCUGc----------GCGGCU-----------AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 30958 0.71 0.442756
Target:  5'- ----aUC-UCGACaUGCCGAUCGACCg -3'
miRNA:   3'- cgucaAGcAGCUGcGCGGCUAGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.