miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 12378 0.7 0.48333
Target:  5'- gGCAGc-CGUC-ACGCGCUGAUCgcgauaGACCc -3'
miRNA:   3'- -CGUCaaGCAGcUGCGCGGCUAG------CUGG- -5'
27675 3' -54.1 NC_005882.1 + 17255 0.7 0.490615
Target:  5'- uGCAGcgCGUC--CGCGUCGAggcucggauacagcUCGGCCa -3'
miRNA:   3'- -CGUCaaGCAGcuGCGCGGCU--------------AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 27651 0.7 0.490615
Target:  5'- cGCGGccugCGUCGccaugccggcggccGCGCGCgCGG-CGACCg -3'
miRNA:   3'- -CGUCaa--GCAGC--------------UGCGCG-GCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 14300 0.7 0.493753
Target:  5'- uGCAGgaugacgacCGUCGAaaccCGUGCgGAUCGugCg -3'
miRNA:   3'- -CGUCaa-------GCAGCU----GCGCGgCUAGCugG- -5'
27675 3' -54.1 NC_005882.1 + 16277 0.7 0.493753
Target:  5'- cCGGcUUGcCGACGaCGUCGAUCGGCa -3'
miRNA:   3'- cGUCaAGCaGCUGC-GCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 19931 0.7 0.504278
Target:  5'- uGCGGccgUCcagcUCGGCGCGCUucgGAUCGACg -3'
miRNA:   3'- -CGUCa--AGc---AGCUGCGCGG---CUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 3541 0.7 0.504278
Target:  5'- cGCGGgcC-UgGGCGUGCCGGUCGucACCg -3'
miRNA:   3'- -CGUCaaGcAgCUGCGCGGCUAGC--UGG- -5'
27675 3' -54.1 NC_005882.1 + 22464 0.69 0.514899
Target:  5'- cGCGGgcuUgGUCGACgGCGCUG--CGGCCg -3'
miRNA:   3'- -CGUCa--AgCAGCUG-CGCGGCuaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 25244 0.69 0.529917
Target:  5'- gGCuGUUCaUCGAguugcccugguggucCGUGCCGAUCGugUu -3'
miRNA:   3'- -CGuCAAGcAGCU---------------GCGCGGCUAGCugG- -5'
27675 3' -54.1 NC_005882.1 + 27557 0.69 0.536403
Target:  5'- uCGGgcgcUCGUCGGCGguCGCCGcgcgcgCGGCCg -3'
miRNA:   3'- cGUCa---AGCAGCUGC--GCGGCua----GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 3282 0.69 0.536403
Target:  5'- cGCGaagUCGUcCGACGUGCUGcgCGAgCg -3'
miRNA:   3'- -CGUca-AGCA-GCUGCGCGGCuaGCUgG- -5'
27675 3' -54.1 NC_005882.1 + 621 0.69 0.547272
Target:  5'- aGCuGGUUCGccuggUCG--GCGCCGAugUCGGCCa -3'
miRNA:   3'- -CG-UCAAGC-----AGCugCGCGGCU--AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 17110 0.69 0.547272
Target:  5'- uCAGUgcggCGUCGAgCGCGuCCuGGUCGGgCg -3'
miRNA:   3'- cGUCAa---GCAGCU-GCGC-GG-CUAGCUgG- -5'
27675 3' -54.1 NC_005882.1 + 29863 0.69 0.547272
Target:  5'- -aGGUUCGUcCGGucaaGCGCCGcgCGugCc -3'
miRNA:   3'- cgUCAAGCA-GCUg---CGCGGCuaGCugG- -5'
27675 3' -54.1 NC_005882.1 + 23740 0.69 0.558211
Target:  5'- aGCuGaUCGgcgaCGGCGCGCUGcUCGGCUu -3'
miRNA:   3'- -CGuCaAGCa---GCUGCGCGGCuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 12947 0.69 0.558211
Target:  5'- aGCuGUUgCGcCGGCccGCGCCGAU-GACCc -3'
miRNA:   3'- -CGuCAA-GCaGCUG--CGCGGCUAgCUGG- -5'
27675 3' -54.1 NC_005882.1 + 4522 0.68 0.580262
Target:  5'- cGCAGgucgaggUCGUCGA-G-GCUGcgCGGCCa -3'
miRNA:   3'- -CGUCa------AGCAGCUgCgCGGCuaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 32075 0.68 0.580262
Target:  5'- cGCA---CGUCGAuCGCGUa-GUCGACCg -3'
miRNA:   3'- -CGUcaaGCAGCU-GCGCGgcUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 31618 0.68 0.580262
Target:  5'- uGCGGUUucgcaCGUCG-CGgccaCGUCGAUCGACa -3'
miRNA:   3'- -CGUCAA-----GCAGCuGC----GCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 19543 0.68 0.591359
Target:  5'- aGCAGcUCGcCGACGCGCaggCGcgUGAgCg -3'
miRNA:   3'- -CGUCaAGCaGCUGCGCG---GCuaGCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.