miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 19543 0.68 0.591359
Target:  5'- aGCAGcUCGcCGACGCGCaggCGcgUGAgCg -3'
miRNA:   3'- -CGUCaAGCaGCUGCGCG---GCuaGCUgG- -5'
27675 3' -54.1 NC_005882.1 + 31798 0.68 0.591359
Target:  5'- cCAGUcgaUCGUCGACGuCGgCGuaAUCGGuCCg -3'
miRNA:   3'- cGUCA---AGCAGCUGC-GCgGC--UAGCU-GG- -5'
27675 3' -54.1 NC_005882.1 + 8756 0.68 0.591359
Target:  5'- gGCAGUUgG-CGACgagcaGCGCCGAaaCGACg -3'
miRNA:   3'- -CGUCAAgCaGCUG-----CGCGGCUa-GCUGg -5'
27675 3' -54.1 NC_005882.1 + 28605 0.68 0.591359
Target:  5'- cGCAGUaUUGcUGGCGCGCagGAUgcCGGCCg -3'
miRNA:   3'- -CGUCA-AGCaGCUGCGCGg-CUA--GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 12463 0.68 0.591359
Target:  5'- cGCGGUUC-UCGcggaaagcggccGCGUGCCGGcCGGCg -3'
miRNA:   3'- -CGUCAAGcAGC------------UGCGCGGCUaGCUGg -5'
27675 3' -54.1 NC_005882.1 + 27003 0.68 0.602491
Target:  5'- -gGGaUUCGggcgCGGCGCGCuCGucGUUGGCCg -3'
miRNA:   3'- cgUC-AAGCa---GCUGCGCG-GC--UAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 28647 0.68 0.602491
Target:  5'- cGC-GUUCGccaagcCGccuUGCGCCGAUCgGACCg -3'
miRNA:   3'- -CGuCAAGCa-----GCu--GCGCGGCUAG-CUGG- -5'
27675 3' -54.1 NC_005882.1 + 10447 0.68 0.602491
Target:  5'- uCAGUgcuugCGUCG-UGCGCUGAgaUCGcGCCa -3'
miRNA:   3'- cGUCAa----GCAGCuGCGCGGCU--AGC-UGG- -5'
27675 3' -54.1 NC_005882.1 + 28361 0.68 0.613649
Target:  5'- cGCAGUcCG-CGAUGCGCgUGGccgUCGACg -3'
miRNA:   3'- -CGUCAaGCaGCUGCGCG-GCU---AGCUGg -5'
27675 3' -54.1 NC_005882.1 + 29543 0.68 0.623706
Target:  5'- aGCAGUUCaa--GCGCGCCGAcuugaagUCGAUUc -3'
miRNA:   3'- -CGUCAAGcagcUGCGCGGCU-------AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 16226 0.68 0.624824
Target:  5'- ----gUCGUCGGCaaGCCGGcCGACUg -3'
miRNA:   3'- cgucaAGCAGCUGcgCGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 27850 0.68 0.624824
Target:  5'- aGCAGgUCGUCGAgcaUGCGCUccaGGUCGcGCa -3'
miRNA:   3'- -CGUCaAGCAGCU---GCGCGG---CUAGC-UGg -5'
27675 3' -54.1 NC_005882.1 + 10889 0.67 0.634888
Target:  5'- -gGGUUCGUCGcaGCGCGCgCGGgcgcaugcggauuUCGcacGCCa -3'
miRNA:   3'- cgUCAAGCAGC--UGCGCG-GCU-------------AGC---UGG- -5'
27675 3' -54.1 NC_005882.1 + 23656 0.67 0.636006
Target:  5'- cGCAcGUUC-UCGAaguUGCGCaugugcgucaCGGUCGGCCa -3'
miRNA:   3'- -CGU-CAAGcAGCU---GCGCG----------GCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 17932 0.67 0.647184
Target:  5'- gGCGG-UCGcCGGC-CGCC--UCGACCu -3'
miRNA:   3'- -CGUCaAGCaGCUGcGCGGcuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 3698 0.67 0.647184
Target:  5'- cGCGGgcCGUCGAgcgGgGCCaGcUCGACCa -3'
miRNA:   3'- -CGUCaaGCAGCUg--CgCGG-CuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 19044 0.67 0.647184
Target:  5'- cCGGcgCGUUGuCGCGCgGAU-GGCCg -3'
miRNA:   3'- cGUCaaGCAGCuGCGCGgCUAgCUGG- -5'
27675 3' -54.1 NC_005882.1 + 29791 0.67 0.647184
Target:  5'- cGCAGcgUGUCGcCGCucGUCGAcUGACCg -3'
miRNA:   3'- -CGUCaaGCAGCuGCG--CGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 9390 0.67 0.647184
Target:  5'- cCAGUacaUCGUCGGgGCGauaCGAUCGuCg -3'
miRNA:   3'- cGUCA---AGCAGCUgCGCg--GCUAGCuGg -5'
27675 3' -54.1 NC_005882.1 + 14270 0.67 0.647184
Target:  5'- ----cUUGUCGACG-GCCGcggCGGCCg -3'
miRNA:   3'- cgucaAGCAGCUGCgCGGCua-GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.