miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 21480 0.77 0.187824
Target:  5'- gGCGGaggaaaUCGUCGACGCGCacuuGcgCGGCCg -3'
miRNA:   3'- -CGUCa-----AGCAGCUGCGCGg---CuaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 21491 0.67 0.680588
Target:  5'- uCGGUauugaUCGUCGuCgGCGCCGGUgCG-CCg -3'
miRNA:   3'- cGUCA-----AGCAGCuG-CGCGGCUA-GCuGG- -5'
27675 3' -54.1 NC_005882.1 + 21664 0.66 0.713564
Target:  5'- cGguGUcCGggagcgCGGCGCcuuCCGGUCGACg -3'
miRNA:   3'- -CguCAaGCa-----GCUGCGc--GGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 22031 0.66 0.724405
Target:  5'- gGCGGUgccaUCGACGUGCuCGAucacguUCGcACCg -3'
miRNA:   3'- -CGUCAagc-AGCUGCGCG-GCU------AGC-UGG- -5'
27675 3' -54.1 NC_005882.1 + 22328 0.67 0.658347
Target:  5'- uGCAG--CGU-GACGcCGCUGGUCGGuCCg -3'
miRNA:   3'- -CGUCaaGCAgCUGC-GCGGCUAGCU-GG- -5'
27675 3' -54.1 NC_005882.1 + 22464 0.69 0.514899
Target:  5'- cGCGGgcuUgGUCGACgGCGCUG--CGGCCg -3'
miRNA:   3'- -CGUCa--AgCAGCUG-CGCGGCuaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 22628 0.74 0.287049
Target:  5'- uGCAGUcgcuguccgaCGUCGACGCGgCGcaguUCGGCCc -3'
miRNA:   3'- -CGUCAa---------GCAGCUGCGCgGCu---AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23174 0.78 0.174883
Target:  5'- cCAGcUCGgggcgaucgcguacaUCGAUGCGCCGAUCGGCa -3'
miRNA:   3'- cGUCaAGC---------------AGCUGCGCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 23267 0.66 0.713564
Target:  5'- cGCcuGcgCGagCGuCGUGCCGAUCGGCg -3'
miRNA:   3'- -CGu-CaaGCa-GCuGCGCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 23425 0.79 0.145951
Target:  5'- aGCAGcUCGUCGGCgucacggGCGUCGAgCGGCCg -3'
miRNA:   3'- -CGUCaAGCAGCUG-------CGCGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23521 0.77 0.193022
Target:  5'- uGCGGaUCGUCGAUcauCGCCGAcagCGGCCg -3'
miRNA:   3'- -CGUCaAGCAGCUGc--GCGGCUa--GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23656 0.67 0.636006
Target:  5'- cGCAcGUUC-UCGAaguUGCGCaugugcgucaCGGUCGGCCa -3'
miRNA:   3'- -CGU-CAAGcAGCU---GCGCG----------GCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23665 1.15 0.000397
Target:  5'- aGCAGUUCGUCGACGCGCCGAUCGACCa -3'
miRNA:   3'- -CGUCAAGCAGCUGCGCGGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23740 0.69 0.558211
Target:  5'- aGCuGaUCGgcgaCGGCGCGCUGcUCGGCUu -3'
miRNA:   3'- -CGuCaAGCa---GCUGCGCGGCuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 25005 0.7 0.48333
Target:  5'- aGCGGcgCGUCGACGCGacaaagcaaucCUGAUgucaggCGGCCc -3'
miRNA:   3'- -CGUCaaGCAGCUGCGC-----------GGCUA------GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 25065 0.75 0.265712
Target:  5'- uGCuuuGUcgCGUCGACGCGCCGcUUGAUUu -3'
miRNA:   3'- -CGu--CAa-GCAGCUGCGCGGCuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 25244 0.69 0.529917
Target:  5'- gGCuGUUCaUCGAguugcccugguggucCGUGCCGAUCGugUu -3'
miRNA:   3'- -CGuCAAGcAGCU---------------GCGCGGCUAGCugG- -5'
27675 3' -54.1 NC_005882.1 + 25468 0.75 0.265712
Target:  5'- cGCAGcUCGUCGGCGacgcgGCCGA--GGCCa -3'
miRNA:   3'- -CGUCaAGCAGCUGCg----CGGCUagCUGG- -5'
27675 3' -54.1 NC_005882.1 + 25694 0.66 0.724405
Target:  5'- gGCAGccgcCGUCGcguAUGUGCCGAgcaugUCGGCg -3'
miRNA:   3'- -CGUCaa--GCAGC---UGCGCGGCU-----AGCUGg -5'
27675 3' -54.1 NC_005882.1 + 25733 0.66 0.724405
Target:  5'- gGCGGccUGcCGAacaGCGCCGAUuacgggcgCGGCCg -3'
miRNA:   3'- -CGUCaaGCaGCUg--CGCGGCUA--------GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.