miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 29171 0.66 0.700445
Target:  5'- uCGGcuaCGcCGGCGCGCCGuugcucgcgugCGGCCg -3'
miRNA:   3'- cGUCaa-GCaGCUGCGCGGCua---------GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 28647 0.68 0.602491
Target:  5'- cGC-GUUCGccaagcCGccuUGCGCCGAUCgGACCg -3'
miRNA:   3'- -CGuCAAGCa-----GCu--GCGCGGCUAG-CUGG- -5'
27675 3' -54.1 NC_005882.1 + 28605 0.68 0.591359
Target:  5'- cGCAGUaUUGcUGGCGCGCagGAUgcCGGCCg -3'
miRNA:   3'- -CGUCA-AGCaGCUGCGCGg-CUA--GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 28361 0.68 0.613649
Target:  5'- cGCAGUcCG-CGAUGCGCgUGGccgUCGACg -3'
miRNA:   3'- -CGUCAaGCaGCUGCGCG-GCU---AGCUGg -5'
27675 3' -54.1 NC_005882.1 + 28214 0.67 0.658347
Target:  5'- aCGGUUCc-CGACGUgucgguuuguuuGCUGGUCGACUg -3'
miRNA:   3'- cGUCAAGcaGCUGCG------------CGGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 27850 0.68 0.624824
Target:  5'- aGCAGgUCGUCGAgcaUGCGCUccaGGUCGcGCa -3'
miRNA:   3'- -CGUCaAGCAGCU---GCGCGG---CUAGC-UGg -5'
27675 3' -54.1 NC_005882.1 + 27651 0.7 0.490615
Target:  5'- cGCGGccugCGUCGccaugccggcggccGCGCGCgCGG-CGACCg -3'
miRNA:   3'- -CGUCaa--GCAGC--------------UGCGCG-GCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 27557 0.69 0.536403
Target:  5'- uCGGgcgcUCGUCGGCGguCGCCGcgcgcgCGGCCg -3'
miRNA:   3'- cGUCa---AGCAGCUGC--GCGGCua----GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 27295 0.67 0.680588
Target:  5'- aGCGGUagaUGagGuACGCGCCGAccgCGAUCg -3'
miRNA:   3'- -CGUCAa--GCagC-UGCGCGGCUa--GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 27003 0.68 0.602491
Target:  5'- -gGGaUUCGggcgCGGCGCGCuCGucGUUGGCCg -3'
miRNA:   3'- cgUC-AAGCa---GCUGCGCG-GC--UAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 26706 0.71 0.442756
Target:  5'- cGCAGUUCG-CGGC-CGCCcAUccCGGCCu -3'
miRNA:   3'- -CGUCAAGCaGCUGcGCGGcUA--GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 25760 0.67 0.680588
Target:  5'- cCGGaUCGgcgagaCGAUGCGCCGugCGGCCc -3'
miRNA:   3'- cGUCaAGCa-----GCUGCGCGGCuaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 25733 0.66 0.724405
Target:  5'- gGCGGccUGcCGAacaGCGCCGAUuacgggcgCGGCCg -3'
miRNA:   3'- -CGUCaaGCaGCUg--CGCGGCUA--------GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 25694 0.66 0.724405
Target:  5'- gGCAGccgcCGUCGcguAUGUGCCGAgcaugUCGGCg -3'
miRNA:   3'- -CGUCaa--GCAGC---UGCGCGGCU-----AGCUGg -5'
27675 3' -54.1 NC_005882.1 + 25468 0.75 0.265712
Target:  5'- cGCAGcUCGUCGGCGacgcgGCCGA--GGCCa -3'
miRNA:   3'- -CGUCaAGCAGCUGCg----CGGCUagCUGG- -5'
27675 3' -54.1 NC_005882.1 + 25244 0.69 0.529917
Target:  5'- gGCuGUUCaUCGAguugcccugguggucCGUGCCGAUCGugUu -3'
miRNA:   3'- -CGuCAAGcAGCU---------------GCGCGGCUAGCugG- -5'
27675 3' -54.1 NC_005882.1 + 25065 0.75 0.265712
Target:  5'- uGCuuuGUcgCGUCGACGCGCCGcUUGAUUu -3'
miRNA:   3'- -CGu--CAa-GCAGCUGCGCGGCuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 25005 0.7 0.48333
Target:  5'- aGCGGcgCGUCGACGCGacaaagcaaucCUGAUgucaggCGGCCc -3'
miRNA:   3'- -CGUCaaGCAGCUGCGC-----------GGCUA------GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23740 0.69 0.558211
Target:  5'- aGCuGaUCGgcgaCGGCGCGCUGcUCGGCUu -3'
miRNA:   3'- -CGuCaAGCa---GCUGCGCGGCuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23665 1.15 0.000397
Target:  5'- aGCAGUUCGUCGACGCGCCGAUCGACCa -3'
miRNA:   3'- -CGUCAAGCAGCUGCGCGGCUAGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.