miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 23656 0.67 0.636006
Target:  5'- cGCAcGUUC-UCGAaguUGCGCaugugcgucaCGGUCGGCCa -3'
miRNA:   3'- -CGU-CAAGcAGCU---GCGCG----------GCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23521 0.77 0.193022
Target:  5'- uGCGGaUCGUCGAUcauCGCCGAcagCGGCCg -3'
miRNA:   3'- -CGUCaAGCAGCUGc--GCGGCUa--GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23425 0.79 0.145951
Target:  5'- aGCAGcUCGUCGGCgucacggGCGUCGAgCGGCCg -3'
miRNA:   3'- -CGUCaAGCAGCUG-------CGCGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23267 0.66 0.713564
Target:  5'- cGCcuGcgCGagCGuCGUGCCGAUCGGCg -3'
miRNA:   3'- -CGu-CaaGCa-GCuGCGCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 23174 0.78 0.174883
Target:  5'- cCAGcUCGgggcgaucgcguacaUCGAUGCGCCGAUCGGCa -3'
miRNA:   3'- cGUCaAGC---------------AGCUGCGCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 22628 0.74 0.287049
Target:  5'- uGCAGUcgcuguccgaCGUCGACGCGgCGcaguUCGGCCc -3'
miRNA:   3'- -CGUCAa---------GCAGCUGCGCgGCu---AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 22464 0.69 0.514899
Target:  5'- cGCGGgcuUgGUCGACgGCGCUG--CGGCCg -3'
miRNA:   3'- -CGUCa--AgCAGCUG-CGCGGCuaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 22328 0.67 0.658347
Target:  5'- uGCAG--CGU-GACGcCGCUGGUCGGuCCg -3'
miRNA:   3'- -CGUCaaGCAgCUGC-GCGGCUAGCU-GG- -5'
27675 3' -54.1 NC_005882.1 + 22031 0.66 0.724405
Target:  5'- gGCGGUgccaUCGACGUGCuCGAucacguUCGcACCg -3'
miRNA:   3'- -CGUCAagc-AGCUGCGCG-GCU------AGC-UGG- -5'
27675 3' -54.1 NC_005882.1 + 21664 0.66 0.713564
Target:  5'- cGguGUcCGggagcgCGGCGCcuuCCGGUCGACg -3'
miRNA:   3'- -CguCAaGCa-----GCUGCGc--GGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 21491 0.67 0.680588
Target:  5'- uCGGUauugaUCGUCGuCgGCGCCGGUgCG-CCg -3'
miRNA:   3'- cGUCA-----AGCAGCuG-CGCGGCUA-GCuGG- -5'
27675 3' -54.1 NC_005882.1 + 21480 0.77 0.187824
Target:  5'- gGCGGaggaaaUCGUCGACGCGCacuuGcgCGGCCg -3'
miRNA:   3'- -CGUCa-----AGCAGCUGCGCGg---CuaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 21315 0.72 0.394865
Target:  5'- cGUAGc-CGuUCGAUGCGCCGGUUG-CCu -3'
miRNA:   3'- -CGUCaaGC-AGCUGCGCGGCUAGCuGG- -5'
27675 3' -54.1 NC_005882.1 + 21251 0.72 0.376669
Target:  5'- gGCAuGcUCGUCGACcgguGCGCCGGccaUGACCa -3'
miRNA:   3'- -CGU-CaAGCAGCUG----CGCGGCUa--GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 20887 0.71 0.442756
Target:  5'- cCAGUUCGagcuugccgucuUCGAUGCGCguguCGA-CGACCg -3'
miRNA:   3'- cGUCAAGC------------AGCUGCGCG----GCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 20729 0.7 0.473014
Target:  5'- aGCGGUccuugUCGUCGGCauagauggcuuCGCCGAccgcgauguucUCGACCu -3'
miRNA:   3'- -CGUCA-----AGCAGCUGc----------GCGGCU-----------AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 19984 0.71 0.432915
Target:  5'- cGC-GUUCG-CGGC-CGCCGcguaAUCGACCu -3'
miRNA:   3'- -CGuCAAGCaGCUGcGCGGC----UAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 19931 0.7 0.504278
Target:  5'- uGCGGccgUCcagcUCGGCGCGCUucgGAUCGACg -3'
miRNA:   3'- -CGUCa--AGc---AGCUGCGCGG---CUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 19854 0.7 0.45172
Target:  5'- gGCgAGaaCGUCGauccgaaGCGCGCCGAgcuggaCGGCCg -3'
miRNA:   3'- -CG-UCaaGCAGC-------UGCGCGGCUa-----GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 19543 0.68 0.591359
Target:  5'- aGCAGcUCGcCGACGCGCaggCGcgUGAgCg -3'
miRNA:   3'- -CGUCaAGCaGCUGCGCG---GCuaGCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.