miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 19482 0.73 0.333712
Target:  5'- cGC-GUUCGgCGaAUGCGCUGGUCGGCg -3'
miRNA:   3'- -CGuCAAGCaGC-UGCGCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 19090 0.66 0.691643
Target:  5'- uGCAGgUUGcCGGcCGaCGCCGAgagagaagCGACCc -3'
miRNA:   3'- -CGUCaAGCaGCU-GC-GCGGCUa-------GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 19044 0.67 0.647184
Target:  5'- cCGGcgCGUUGuCGCGCgGAU-GGCCg -3'
miRNA:   3'- cGUCaaGCAGCuGCGCGgCUAgCUGG- -5'
27675 3' -54.1 NC_005882.1 + 18624 0.66 0.735152
Target:  5'- cGCuaaccUGUCGACGaGCCGAUCGcGCUc -3'
miRNA:   3'- -CGucaa-GCAGCUGCgCGGCUAGC-UGG- -5'
27675 3' -54.1 NC_005882.1 + 17932 0.67 0.647184
Target:  5'- gGCGG-UCGcCGGC-CGCC--UCGACCu -3'
miRNA:   3'- -CGUCaAGCaGCUGcGCGGcuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 17867 0.66 0.735152
Target:  5'- gGCAucaagGUCGAgGCgGCCGG-CGACCg -3'
miRNA:   3'- -CGUcaag-CAGCUgCG-CGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 17255 0.7 0.490615
Target:  5'- uGCAGcgCGUC--CGCGUCGAggcucggauacagcUCGGCCa -3'
miRNA:   3'- -CGUCaaGCAGcuGCGCGGCU--------------AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 17207 0.74 0.272678
Target:  5'- aGCAGcUCGUCGGCacucGCGCCGuUCGcaauCCg -3'
miRNA:   3'- -CGUCaAGCAGCUG----CGCGGCuAGCu---GG- -5'
27675 3' -54.1 NC_005882.1 + 17110 0.69 0.547272
Target:  5'- uCAGUgcggCGUCGAgCGCGuCCuGGUCGGgCg -3'
miRNA:   3'- cGUCAa---GCAGCU-GCGC-GG-CUAGCUgG- -5'
27675 3' -54.1 NC_005882.1 + 16823 0.75 0.265712
Target:  5'- -------uUCGACgGCGCCGAUCGACCc -3'
miRNA:   3'- cgucaagcAGCUG-CGCGGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 16699 0.66 0.713564
Target:  5'- gGCGa--CGUCGACGCGCgCGuccgcgcaGGCCg -3'
miRNA:   3'- -CGUcaaGCAGCUGCGCG-GCuag-----CUGG- -5'
27675 3' -54.1 NC_005882.1 + 16677 0.66 0.722244
Target:  5'- aGCAGgcgcucguagaCGUCGGCGCuaCCGGUCuuGCCg -3'
miRNA:   3'- -CGUCaa---------GCAGCUGCGc-GGCUAGc-UGG- -5'
27675 3' -54.1 NC_005882.1 + 16458 0.67 0.669486
Target:  5'- aCGGUUCGcCGA--UGCUGGUCGGCa -3'
miRNA:   3'- cGUCAAGCaGCUgcGCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 16277 0.7 0.493753
Target:  5'- cCGGcUUGcCGACGaCGUCGAUCGGCa -3'
miRNA:   3'- cGUCaAGCaGCUGC-GCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 16226 0.68 0.624824
Target:  5'- ----gUCGUCGGCaaGCCGGcCGACUg -3'
miRNA:   3'- cgucaAGCAGCUGcgCGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 15732 0.66 0.691643
Target:  5'- gGCGGcgUCGcCGugGCGCUugccGUCGuCCu -3'
miRNA:   3'- -CGUCa-AGCaGCugCGCGGc---UAGCuGG- -5'
27675 3' -54.1 NC_005882.1 + 15612 0.66 0.691643
Target:  5'- -gAGgcCGUCGAuCGUGCCGucuUCGaacGCCg -3'
miRNA:   3'- cgUCaaGCAGCU-GCGCGGCu--AGC---UGG- -5'
27675 3' -54.1 NC_005882.1 + 15543 0.66 0.691643
Target:  5'- gGCGgcGUUCGaaGACG-GCaCGAUCGACg -3'
miRNA:   3'- -CGU--CAAGCagCUGCgCG-GCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 15412 0.7 0.473014
Target:  5'- gGCGGcgCcuUCGACGCGCgGGgcaaCGGCCa -3'
miRNA:   3'- -CGUCaaGc-AGCUGCGCGgCUa---GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 15274 0.66 0.735152
Target:  5'- aGCGGg-CGUCGACcgggaGCGCCGugagcagCgGGCCg -3'
miRNA:   3'- -CGUCaaGCAGCUG-----CGCGGCua-----G-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.