Results 81 - 100 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27675 | 3' | -54.1 | NC_005882.1 | + | 15060 | 0.72 | 0.359047 |
Target: 5'- cGCAuGgcUGUCGcGCGCGCUGAUCGAg- -3' miRNA: 3'- -CGU-CaaGCAGC-UGCGCGGCUAGCUgg -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 14300 | 0.7 | 0.493753 |
Target: 5'- uGCAGgaugacgacCGUCGAaaccCGUGCgGAUCGugCg -3' miRNA: 3'- -CGUCaa-------GCAGCU----GCGCGgCUAGCugG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 14270 | 0.67 | 0.647184 |
Target: 5'- ----cUUGUCGACG-GCCGcggCGGCCg -3' miRNA: 3'- cgucaAGCAGCUGCgCGGCua-GCUGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 12947 | 0.69 | 0.558211 |
Target: 5'- aGCuGUUgCGcCGGCccGCGCCGAU-GACCc -3' miRNA: 3'- -CGuCAA-GCaGCUG--CGCGGCUAgCUGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 12827 | 0.75 | 0.258891 |
Target: 5'- uCAGUUCGUCGgauucgagcGCGUGCCGGgcuucUCGGCg -3' miRNA: 3'- cGUCAAGCAGC---------UGCGCGGCU-----AGCUGg -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 12718 | 0.73 | 0.309711 |
Target: 5'- cGCAGcgCGcggCGGCGCucGCCGG-CGACCu -3' miRNA: 3'- -CGUCaaGCa--GCUGCG--CGGCUaGCUGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 12463 | 0.68 | 0.591359 |
Target: 5'- cGCGGUUC-UCGcggaaagcggccGCGUGCCGGcCGGCg -3' miRNA: 3'- -CGUCAAGcAGC------------UGCGCGGCUaGCUGg -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 12378 | 0.7 | 0.48333 |
Target: 5'- gGCAGc-CGUC-ACGCGCUGAUCgcgauaGACCc -3' miRNA: 3'- -CGUCaaGCAGcUGCGCGGCUAG------CUGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 12324 | 0.72 | 0.385697 |
Target: 5'- uCAGcgCGUgacggcugcCGGCgGCGCCGAUCGGCa -3' miRNA: 3'- cGUCaaGCA---------GCUG-CGCGGCUAGCUGg -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 11988 | 0.66 | 0.735152 |
Target: 5'- cGCGGccaCGggcgCGGCgGCGCCGAgcaacgCGACg -3' miRNA: 3'- -CGUCaa-GCa---GCUG-CGCGGCUa-----GCUGg -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 10889 | 0.67 | 0.634888 |
Target: 5'- -gGGUUCGUCGcaGCGCGCgCGGgcgcaugcggauuUCGcacGCCa -3' miRNA: 3'- cgUCAAGCAGC--UGCGCG-GCU-------------AGC---UGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 10447 | 0.68 | 0.602491 |
Target: 5'- uCAGUgcuugCGUCG-UGCGCUGAgaUCGcGCCa -3' miRNA: 3'- cGUCAa----GCAGCuGCGCGGCU--AGC-UGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 9489 | 0.68 | 0.591359 |
Target: 5'- cGCug--CGaUUGGCGCGCUGG-CGGCCg -3' miRNA: 3'- -CGucaaGC-AGCUGCGCGGCUaGCUGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 9390 | 0.67 | 0.647184 |
Target: 5'- cCAGUacaUCGUCGGgGCGauaCGAUCGuCg -3' miRNA: 3'- cGUCA---AGCAGCUgCGCg--GCUAGCuGg -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 8756 | 0.68 | 0.591359 |
Target: 5'- gGCAGUUgG-CGACgagcaGCGCCGAaaCGACg -3' miRNA: 3'- -CGUCAAgCaGCUG-----CGCGGCUa-GCUGg -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 8274 | 0.72 | 0.373099 |
Target: 5'- uGCGGUgccgauuUCGUcacucgcuggguggCGGCaaGCGCCGGUCGGCUg -3' miRNA: 3'- -CGUCA-------AGCA--------------GCUG--CGCGGCUAGCUGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 8055 | 0.66 | 0.691643 |
Target: 5'- cGCGGcaaCGUCGA-GCGCCauguacagcccGAacUCGACCu -3' miRNA: 3'- -CGUCaa-GCAGCUgCGCGG-----------CU--AGCUGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 6636 | 0.71 | 0.432915 |
Target: 5'- -aAGUcgUCGUgCGGCGCGCCGugcgucUCGGCg -3' miRNA: 3'- cgUCA--AGCA-GCUGCGCGGCu-----AGCUGg -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 5026 | 0.67 | 0.680588 |
Target: 5'- gGCAGga-GUCGACGUaccugucacgaGCUGcUCGAUCu -3' miRNA: 3'- -CGUCaagCAGCUGCG-----------CGGCuAGCUGG- -5' |
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27675 | 3' | -54.1 | NC_005882.1 | + | 4794 | 0.67 | 0.647184 |
Target: 5'- aGCAGcUCGacgCGAuCGuCGCCGAgcuuacCGGCCc -3' miRNA: 3'- -CGUCaAGCa--GCU-GC-GCGGCUa-----GCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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