miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 17110 0.69 0.547272
Target:  5'- uCAGUgcggCGUCGAgCGCGuCCuGGUCGGgCg -3'
miRNA:   3'- cGUCAa---GCAGCU-GCGC-GG-CUAGCUgG- -5'
27675 3' -54.1 NC_005882.1 + 32075 0.68 0.580262
Target:  5'- cGCA---CGUCGAuCGCGUa-GUCGACCg -3'
miRNA:   3'- -CGUcaaGCAGCU-GCGCGgcUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 31618 0.68 0.580262
Target:  5'- uGCGGUUucgcaCGUCG-CGgccaCGUCGAUCGACa -3'
miRNA:   3'- -CGUCAA-----GCAGCuGC----GCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 20887 0.71 0.442756
Target:  5'- cCAGUUCGagcuugccgucuUCGAUGCGCguguCGA-CGACCg -3'
miRNA:   3'- cGUCAAGC------------AGCUGCGCG----GCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 19984 0.71 0.432915
Target:  5'- cGC-GUUCG-CGGC-CGCCGcguaAUCGACCu -3'
miRNA:   3'- -CGuCAAGCaGCUGcGCGGC----UAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23521 0.77 0.193022
Target:  5'- uGCGGaUCGUCGAUcauCGCCGAcagCGGCCg -3'
miRNA:   3'- -CGUCaAGCAGCUGc--GCGGCUa--GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 1600 0.77 0.193022
Target:  5'- uGCGauGggCGUCGACccguGCGgCGAUCGACCa -3'
miRNA:   3'- -CGU--CaaGCAGCUG----CGCgGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 12827 0.75 0.258891
Target:  5'- uCAGUUCGUCGgauucgagcGCGUGCCGGgcuucUCGGCg -3'
miRNA:   3'- cGUCAAGCAGC---------UGCGCGGCU-----AGCUGg -5'
27675 3' -54.1 NC_005882.1 + 25065 0.75 0.265712
Target:  5'- uGCuuuGUcgCGUCGACGCGCCGcUUGAUUu -3'
miRNA:   3'- -CGu--CAa-GCAGCUGCGCGGCuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 25468 0.75 0.265712
Target:  5'- cGCAGcUCGUCGGCGacgcgGCCGA--GGCCa -3'
miRNA:   3'- -CGUCaAGCAGCUGCg----CGGCUagCUGG- -5'
27675 3' -54.1 NC_005882.1 + 17207 0.74 0.272678
Target:  5'- aGCAGcUCGUCGGCacucGCGCCGuUCGcaauCCg -3'
miRNA:   3'- -CGUCaAGCAGCUG----CGCGGCuAGCu---GG- -5'
27675 3' -54.1 NC_005882.1 + 3666 0.74 0.272678
Target:  5'- aGCGG--CGUCGACGCGCUGcgcacUCGGCUc -3'
miRNA:   3'- -CGUCaaGCAGCUGCGCGGCu----AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 19482 0.73 0.333712
Target:  5'- cGC-GUUCGgCGaAUGCGCUGGUCGGCg -3'
miRNA:   3'- -CGuCAAGCaGC-UGCGCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 32463 0.72 0.359047
Target:  5'- gGCAGUgcggaugCGUCGACGCcaUCGAUCagguaGACCa -3'
miRNA:   3'- -CGUCAa------GCAGCUGCGc-GGCUAG-----CUGG- -5'
27675 3' -54.1 NC_005882.1 + 8274 0.72 0.373099
Target:  5'- uGCGGUgccgauuUCGUcacucgcuggguggCGGCaaGCGCCGGUCGGCUg -3'
miRNA:   3'- -CGUCA-------AGCA--------------GCUG--CGCGGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 3711 0.72 0.376669
Target:  5'- -aAGUUCGgccgucUCGACaaGCCGGUCGGCg -3'
miRNA:   3'- cgUCAAGC------AGCUGcgCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 21251 0.72 0.376669
Target:  5'- gGCAuGcUCGUCGACcgguGCGCCGGccaUGACCa -3'
miRNA:   3'- -CGU-CaAGCAGCUG----CGCGGCUa--GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 29279 0.72 0.393942
Target:  5'- gGCGGUUCGUCGAagccaaucuCGUCGAUcucgaagCGGCCg -3'
miRNA:   3'- -CGUCAAGCAGCUgc-------GCGGCUA-------GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 21315 0.72 0.394865
Target:  5'- cGUAGc-CGuUCGAUGCGCCGGUUG-CCu -3'
miRNA:   3'- -CGUCaaGC-AGCUGCGCGGCUAGCuGG- -5'
27675 3' -54.1 NC_005882.1 + 31676 0.71 0.432915
Target:  5'- cCAGgUCGUCGACGagcgaGCCGAguugcccCGGCUg -3'
miRNA:   3'- cGUCaAGCAGCUGCg----CGGCUa------GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.