miRNA display CGI


Results 41 - 60 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 22328 0.67 0.658347
Target:  5'- uGCAG--CGU-GACGcCGCUGGUCGGuCCg -3'
miRNA:   3'- -CGUCaaGCAgCUGC-GCGGCUAGCU-GG- -5'
27675 3' -54.1 NC_005882.1 + 17110 0.69 0.547272
Target:  5'- uCAGUgcggCGUCGAgCGCGuCCuGGUCGGgCg -3'
miRNA:   3'- cGUCAa---GCAGCU-GCGC-GG-CUAGCUgG- -5'
27675 3' -54.1 NC_005882.1 + 19984 0.71 0.432915
Target:  5'- cGC-GUUCG-CGGC-CGCCGcguaAUCGACCu -3'
miRNA:   3'- -CGuCAAGCaGCUGcGCGGC----UAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 28214 0.67 0.658347
Target:  5'- aCGGUUCc-CGACGUgucgguuuguuuGCUGGUCGACUg -3'
miRNA:   3'- cGUCAAGcaGCUGCG------------CGGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 31676 0.71 0.432915
Target:  5'- cCAGgUCGUCGACGagcgaGCCGAguugcccCGGCUg -3'
miRNA:   3'- cGUCaAGCAGCUGCg----CGGCUa------GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 31958 0.66 0.724405
Target:  5'- gGCAGccccgUGUCGACGaGCgGGUaGACCu -3'
miRNA:   3'- -CGUCaa---GCAGCUGCgCGgCUAgCUGG- -5'
27675 3' -54.1 NC_005882.1 + 865 0.7 0.452722
Target:  5'- cGCA---CGUCGACGCGCuCGAaUGGCUc -3'
miRNA:   3'- -CGUcaaGCAGCUGCGCG-GCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 16677 0.66 0.722244
Target:  5'- aGCAGgcgcucguagaCGUCGGCGCuaCCGGUCuuGCCg -3'
miRNA:   3'- -CGUCaa---------GCAGCUGCGc-GGCUAGc-UGG- -5'
27675 3' -54.1 NC_005882.1 + 21664 0.66 0.713564
Target:  5'- cGguGUcCGggagcgCGGCGCcuuCCGGUCGACg -3'
miRNA:   3'- -CguCAaGCa-----GCUGCGc--GGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 8055 0.66 0.691643
Target:  5'- cGCGGcaaCGUCGA-GCGCCauguacagcccGAacUCGACCu -3'
miRNA:   3'- -CGUCaa-GCAGCUgCGCGG-----------CU--AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 15612 0.66 0.691643
Target:  5'- -gAGgcCGUCGAuCGUGCCGucuUCGaacGCCg -3'
miRNA:   3'- cgUCaaGCAGCU-GCGCGGCu--AGC---UGG- -5'
27675 3' -54.1 NC_005882.1 + 15732 0.66 0.691643
Target:  5'- gGCGGcgUCGcCGugGCGCUugccGUCGuCCu -3'
miRNA:   3'- -CGUCa-AGCaGCugCGCGGc---UAGCuGG- -5'
27675 3' -54.1 NC_005882.1 + 21491 0.67 0.680588
Target:  5'- uCGGUauugaUCGUCGuCgGCGCCGGUgCG-CCg -3'
miRNA:   3'- cGUCA-----AGCAGCuG-CGCGGCUA-GCuGG- -5'
27675 3' -54.1 NC_005882.1 + 29791 0.67 0.647184
Target:  5'- cGCAGcgUGUCGcCGCucGUCGAcUGACCg -3'
miRNA:   3'- -CGUCaaGCAGCuGCG--CGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23656 0.67 0.636006
Target:  5'- cGCAcGUUC-UCGAaguUGCGCaugugcgucaCGGUCGGCCa -3'
miRNA:   3'- -CGU-CAAGcAGCU---GCGCG----------GCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 8756 0.68 0.591359
Target:  5'- gGCAGUUgG-CGACgagcaGCGCCGAaaCGACg -3'
miRNA:   3'- -CGUCAAgCaGCUG-----CGCGGCUa-GCUGg -5'
27675 3' -54.1 NC_005882.1 + 31618 0.68 0.580262
Target:  5'- uGCGGUUucgcaCGUCG-CGgccaCGUCGAUCGACa -3'
miRNA:   3'- -CGUCAA-----GCAGCuGC----GCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 25244 0.69 0.529917
Target:  5'- gGCuGUUCaUCGAguugcccugguggucCGUGCCGAUCGugUu -3'
miRNA:   3'- -CGuCAAGcAGCU---------------GCGCGGCUAGCugG- -5'
27675 3' -54.1 NC_005882.1 + 19931 0.7 0.504278
Target:  5'- uGCGGccgUCcagcUCGGCGCGCUucgGAUCGACg -3'
miRNA:   3'- -CGUCa--AGc---AGCUGCGCGG---CUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 12378 0.7 0.48333
Target:  5'- gGCAGc-CGUC-ACGCGCUGAUCgcgauaGACCc -3'
miRNA:   3'- -CGUCaaGCAGcUGCGCGGCUAG------CUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.