miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 3' -54.1 NC_005882.1 + 15732 0.66 0.691643
Target:  5'- gGCGGcgUCGcCGugGCGCUugccGUCGuCCu -3'
miRNA:   3'- -CGUCa-AGCaGCugCGCGGc---UAGCuGG- -5'
27675 3' -54.1 NC_005882.1 + 8055 0.66 0.691643
Target:  5'- cGCGGcaaCGUCGA-GCGCCauguacagcccGAacUCGACCu -3'
miRNA:   3'- -CGUCaa-GCAGCUgCGCGG-----------CU--AGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 19090 0.66 0.691643
Target:  5'- uGCAGgUUGcCGGcCGaCGCCGAgagagaagCGACCc -3'
miRNA:   3'- -CGUCaAGCaGCU-GC-GCGGCUa-------GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 25760 0.67 0.680588
Target:  5'- cCGGaUCGgcgagaCGAUGCGCCGugCGGCCc -3'
miRNA:   3'- cGUCaAGCa-----GCUGCGCGGCuaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 27295 0.67 0.680588
Target:  5'- aGCGGUagaUGagGuACGCGCCGAccgCGAUCg -3'
miRNA:   3'- -CGUCAa--GCagC-UGCGCGGCUa--GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 21491 0.67 0.680588
Target:  5'- uCGGUauugaUCGUCGuCgGCGCCGGUgCG-CCg -3'
miRNA:   3'- cGUCA-----AGCAGCuG-CGCGGCUA-GCuGG- -5'
27675 3' -54.1 NC_005882.1 + 5026 0.67 0.680588
Target:  5'- gGCAGga-GUCGACGUaccugucacgaGCUGcUCGAUCu -3'
miRNA:   3'- -CGUCaagCAGCUGCG-----------CGGCuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 16458 0.67 0.669486
Target:  5'- aCGGUUCGcCGA--UGCUGGUCGGCa -3'
miRNA:   3'- cGUCAAGCaGCUgcGCGGCUAGCUGg -5'
27675 3' -54.1 NC_005882.1 + 2059 0.67 0.658347
Target:  5'- cGCGGaUCGgugauguccaaUCGGCGCaGCgCGAgcacgCGGCCg -3'
miRNA:   3'- -CGUCaAGC-----------AGCUGCG-CG-GCUa----GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 22328 0.67 0.658347
Target:  5'- uGCAG--CGU-GACGcCGCUGGUCGGuCCg -3'
miRNA:   3'- -CGUCaaGCAgCUGC-GCGGCUAGCU-GG- -5'
27675 3' -54.1 NC_005882.1 + 28214 0.67 0.658347
Target:  5'- aCGGUUCc-CGACGUgucgguuuguuuGCUGGUCGACUg -3'
miRNA:   3'- cGUCAAGcaGCUGCG------------CGGCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 17932 0.67 0.647184
Target:  5'- gGCGG-UCGcCGGC-CGCC--UCGACCu -3'
miRNA:   3'- -CGUCaAGCaGCUGcGCGGcuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 29791 0.67 0.647184
Target:  5'- cGCAGcgUGUCGcCGCucGUCGAcUGACCg -3'
miRNA:   3'- -CGUCaaGCAGCuGCG--CGGCUaGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 4794 0.67 0.647184
Target:  5'- aGCAGcUCGacgCGAuCGuCGCCGAgcuuacCGGCCc -3'
miRNA:   3'- -CGUCaAGCa--GCU-GC-GCGGCUa-----GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 19044 0.67 0.647184
Target:  5'- cCGGcgCGUUGuCGCGCgGAU-GGCCg -3'
miRNA:   3'- cGUCaaGCAGCuGCGCGgCUAgCUGG- -5'
27675 3' -54.1 NC_005882.1 + 14270 0.67 0.647184
Target:  5'- ----cUUGUCGACG-GCCGcggCGGCCg -3'
miRNA:   3'- cgucaAGCAGCUGCgCGGCua-GCUGG- -5'
27675 3' -54.1 NC_005882.1 + 9390 0.67 0.647184
Target:  5'- cCAGUacaUCGUCGGgGCGauaCGAUCGuCg -3'
miRNA:   3'- cGUCA---AGCAGCUgCGCg--GCUAGCuGg -5'
27675 3' -54.1 NC_005882.1 + 3698 0.67 0.647184
Target:  5'- cGCGGgcCGUCGAgcgGgGCCaGcUCGACCa -3'
miRNA:   3'- -CGUCaaGCAGCUg--CgCGG-CuAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 23656 0.67 0.636006
Target:  5'- cGCAcGUUC-UCGAaguUGCGCaugugcgucaCGGUCGGCCa -3'
miRNA:   3'- -CGU-CAAGcAGCU---GCGCG----------GCUAGCUGG- -5'
27675 3' -54.1 NC_005882.1 + 10889 0.67 0.634888
Target:  5'- -gGGUUCGUCGcaGCGCGCgCGGgcgcaugcggauuUCGcacGCCa -3'
miRNA:   3'- cgUCAAGCAGC--UGCGCG-GCU-------------AGC---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.