miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27675 5' -53.9 NC_005882.1 + 29450 0.66 0.723358
Target:  5'- gUGACUCGgUCGaugCGAauaucccgaaugcgGcCGGUGAGCg -3'
miRNA:   3'- aGCUGAGCgAGCa--GCU--------------CaGCCACUUG- -5'
27675 5' -53.9 NC_005882.1 + 31575 0.66 0.704638
Target:  5'- gCGACgagCGUcaCGUCGGuGUCGGUcgcGAACg -3'
miRNA:   3'- aGCUGa--GCGa-GCAGCU-CAGCCA---CUUG- -5'
27675 5' -53.9 NC_005882.1 + 13816 0.66 0.704638
Target:  5'- cUCGAaagcgCGCUCGUCGAGggcaacuucaCGGgcuaucagGAGCu -3'
miRNA:   3'- -AGCUga---GCGAGCAGCUCa---------GCCa-------CUUG- -5'
27675 5' -53.9 NC_005882.1 + 19827 0.66 0.693522
Target:  5'- aCGACgggCGCcgacacCGUCGAGUaCGGcgaGAACg -3'
miRNA:   3'- aGCUGa--GCGa-----GCAGCUCA-GCCa--CUUG- -5'
27675 5' -53.9 NC_005882.1 + 2485 0.67 0.648548
Target:  5'- aUCGcCUCGUUCG-CGAGcUGGcGGACg -3'
miRNA:   3'- -AGCuGAGCGAGCaGCUCaGCCaCUUG- -5'
27675 5' -53.9 NC_005882.1 + 4708 0.67 0.648548
Target:  5'- gUUGACcCGCUCG-CGGGcCGGUaAGCu -3'
miRNA:   3'- -AGCUGaGCGAGCaGCUCaGCCAcUUG- -5'
27675 5' -53.9 NC_005882.1 + 3647 0.67 0.625919
Target:  5'- cCGAC-CgGCUUGUCGAGaCGGccGAACu -3'
miRNA:   3'- aGCUGaG-CGAGCAGCUCaGCCa-CUUG- -5'
27675 5' -53.9 NC_005882.1 + 32463 0.68 0.580812
Target:  5'- aCGGCUgGaguCUCGcCGAGUCGGaUGAGg -3'
miRNA:   3'- aGCUGAgC---GAGCaGCUCAGCC-ACUUg -5'
27675 5' -53.9 NC_005882.1 + 11391 0.68 0.55849
Target:  5'- uUCGAUgucaguaCGCUCGUaaGGaUCGGUGGGCu -3'
miRNA:   3'- -AGCUGa------GCGAGCAgcUC-AGCCACUUG- -5'
27675 5' -53.9 NC_005882.1 + 34490 0.69 0.525493
Target:  5'- gUCGGCUCGgUCGUCGGaUCGaUGcGCa -3'
miRNA:   3'- -AGCUGAGCgAGCAGCUcAGCcACuUG- -5'
27675 5' -53.9 NC_005882.1 + 10535 0.69 0.525493
Target:  5'- cCGACgCGUgacagCGUCGAcuaCGGUGAGCg -3'
miRNA:   3'- aGCUGaGCGa----GCAGCUca-GCCACUUG- -5'
27675 5' -53.9 NC_005882.1 + 28434 0.69 0.514655
Target:  5'- aUUGAgUCGCUCGUCGAG-CGuGcUGAccaACa -3'
miRNA:   3'- -AGCUgAGCGAGCAGCUCaGC-C-ACU---UG- -5'
27675 5' -53.9 NC_005882.1 + 21254 0.7 0.451766
Target:  5'- cUCGGCaUGCUCGUCGAc-CGGUGcGCc -3'
miRNA:   3'- -AGCUGaGCGAGCAGCUcaGCCACuUG- -5'
27675 5' -53.9 NC_005882.1 + 31616 0.77 0.169858
Target:  5'- cUCGGCUCGCUCGUCGAcgaccugggcgacGUCGacGUGAc- -3'
miRNA:   3'- -AGCUGAGCGAGCAGCU-------------CAGC--CACUug -5'
27675 5' -53.9 NC_005882.1 + 23700 1.11 0.00067
Target:  5'- aUCGACUCGCUCGUCGAGUCGGUGAACg -3'
miRNA:   3'- -AGCUGAGCGAGCAGCUCAGCCACUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.