miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27676 5' -56.9 NC_005882.1 + 26963 0.66 0.496272
Target:  5'- ------aACACGGUggacaggcgggaGCCGCCACCGg- -3'
miRNA:   3'- auguucaUGUGCCA------------CGGCGGUGGCga -5'
27676 5' -56.9 NC_005882.1 + 26625 0.66 0.485669
Target:  5'- -uCGGGauCACGGUugGCCGCgCGCUGCUg -3'
miRNA:   3'- auGUUCauGUGCCA--CGGCG-GUGGCGA- -5'
27676 5' -56.9 NC_005882.1 + 20805 0.66 0.485669
Target:  5'- aUACGGcGUACGCuGUugGCCGCCgGCUGCa -3'
miRNA:   3'- -AUGUU-CAUGUGcCA--CGGCGG-UGGCGa -5'
27676 5' -56.9 NC_005882.1 + 29854 0.66 0.475174
Target:  5'- aUGCGGGgcgACACGaagcugGCCGCCGgUGCg -3'
miRNA:   3'- -AUGUUCa--UGUGCca----CGGCGGUgGCGa -5'
27676 5' -56.9 NC_005882.1 + 16007 0.66 0.454532
Target:  5'- gGCGGGUGC---GUG-CGCCGCCGCa -3'
miRNA:   3'- aUGUUCAUGugcCACgGCGGUGGCGa -5'
27676 5' -56.9 NC_005882.1 + 24871 0.66 0.444395
Target:  5'- cGCAGGcGCuggacuCGGcGCUGCgACCGCUg -3'
miRNA:   3'- aUGUUCaUGu-----GCCaCGGCGgUGGCGA- -5'
27676 5' -56.9 NC_005882.1 + 23638 0.66 0.444395
Target:  5'- cGCAuGUGCgucACGGUcgGCCauGCCGCCGUg -3'
miRNA:   3'- aUGUuCAUG---UGCCA--CGG--CGGUGGCGa -5'
27676 5' -56.9 NC_005882.1 + 16538 0.67 0.434386
Target:  5'- gACAuGGUGCA-GGaUGCUGUCGCCGUg -3'
miRNA:   3'- aUGU-UCAUGUgCC-ACGGCGGUGGCGa -5'
27676 5' -56.9 NC_005882.1 + 33609 0.67 0.424509
Target:  5'- -uCGAGcUACACgacgauucuuggGGUGaCGCCGCCGCa -3'
miRNA:   3'- auGUUC-AUGUG------------CCACgGCGGUGGCGa -5'
27676 5' -56.9 NC_005882.1 + 10599 0.67 0.424509
Target:  5'- aAguGGUcaACACGcUGCCGCCgccuccGCCGCUg -3'
miRNA:   3'- aUguUCA--UGUGCcACGGCGG------UGGCGA- -5'
27676 5' -56.9 NC_005882.1 + 23423 0.67 0.414768
Target:  5'- gACAcGUGCGCGaagGcCCGCCGCaCGCg -3'
miRNA:   3'- aUGUuCAUGUGCca-C-GGCGGUG-GCGa -5'
27676 5' -56.9 NC_005882.1 + 15673 0.67 0.405164
Target:  5'- gGCAAGcgcCACGGcGaCGCCGCCGUa -3'
miRNA:   3'- aUGUUCau-GUGCCaCgGCGGUGGCGa -5'
27676 5' -56.9 NC_005882.1 + 2284 0.67 0.405164
Target:  5'- aACGAGUACAgGGUgacGuuGCCcuucuuGCCGCc -3'
miRNA:   3'- aUGUUCAUGUgCCA---CggCGG------UGGCGa -5'
27676 5' -56.9 NC_005882.1 + 21361 0.67 0.395703
Target:  5'- cGCAGGaUGCGgaugacgucgcCGGccGCCGUCGCCGCa -3'
miRNA:   3'- aUGUUC-AUGU-----------GCCa-CGGCGGUGGCGa -5'
27676 5' -56.9 NC_005882.1 + 30315 0.68 0.386384
Target:  5'- aACAGGU-CGCGGUGCUccuggacaGCCGgUGCg -3'
miRNA:   3'- aUGUUCAuGUGCCACGG--------CGGUgGCGa -5'
27676 5' -56.9 NC_005882.1 + 3618 0.68 0.377212
Target:  5'- cGCGAucGUGCcgaaACGGUGUCGCUGCUGUa -3'
miRNA:   3'- aUGUU--CAUG----UGCCACGGCGGUGGCGa -5'
27676 5' -56.9 NC_005882.1 + 5784 0.68 0.368188
Target:  5'- aUGCAGGaGCGCGGcgggGCCGaCCuGCUGCa -3'
miRNA:   3'- -AUGUUCaUGUGCCa---CGGC-GG-UGGCGa -5'
27676 5' -56.9 NC_005882.1 + 30020 0.68 0.368188
Target:  5'- gACuucGGUu--UGGUaGCCGCCGCCGCg -3'
miRNA:   3'- aUGu--UCAuguGCCA-CGGCGGUGGCGa -5'
27676 5' -56.9 NC_005882.1 + 28251 0.69 0.333594
Target:  5'- ----cGUACAgcccaaGGUGCCGCCggcgGCCGCg -3'
miRNA:   3'- auguuCAUGUg-----CCACGGCGG----UGGCGa -5'
27676 5' -56.9 NC_005882.1 + 15736 0.69 0.324509
Target:  5'- aACAAGggAC-CGGUGaCCGCCaagucgcggcggcGCCGCUc -3'
miRNA:   3'- aUGUUCa-UGuGCCAC-GGCGG-------------UGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.